Wall clock time and date at job start Mon Mar 30 2020 02:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35678 * 117.00479 * 2 1 4 4 C 1.38918 * 119.68792 * 180.25869 * 3 2 1 5 5 C 1.38382 * 119.11091 * 180.31651 * 4 3 2 6 6 C 1.50700 * 120.75616 * 179.71106 * 5 4 3 7 7 N 1.46498 * 109.46769 * 269.71513 * 6 5 4 8 8 C 1.36943 * 119.99752 * 179.72432 * 7 6 5 9 9 H 1.08002 * 119.99793 * 0.27665 * 8 7 6 10 10 C 1.38811 * 120.00012 * 180.27737 * 8 7 6 11 11 N 1.31624 * 119.99698 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00072 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47213 * 60.00246 * 12 10 8 14 14 H 1.48502 * 109.47317 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47081 * 299.99875 * 12 10 8 16 16 C 1.38824 * 118.48291 * 359.43169 * 5 4 3 17 17 C 1.38049 * 119.29089 * 0.27934 * 16 5 4 18 18 N 1.31961 * 120.83716 * 0.02562 * 17 16 5 19 19 H 1.09002 * 109.47336 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46841 * 300.00148 * 1 2 3 21 21 H 1.09004 * 109.47369 * 59.99855 * 1 2 3 22 22 H 1.07996 * 120.44512 * 0.02562 * 4 3 2 23 23 H 1.09004 * 109.47210 * 149.71871 * 6 5 4 24 24 H 1.08994 * 109.47121 * 29.71841 * 6 5 4 25 25 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 26 26 H 0.96999 * 119.99739 * 180.02562 * 11 10 8 27 27 H 1.07999 * 120.35469 * 180.25500 * 16 5 4 28 28 H 1.07999 * 119.58294 * 180.02562 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 -0.0054 5 6 4.0486 2.5131 0.0013 6 6 5.5513 2.6268 0.0023 7 7 6.0373 2.6631 1.3838 8 6 7.3801 2.7589 1.6349 9 1 8.0804 2.8122 0.8144 10 6 7.8410 2.7875 2.9439 11 7 6.9875 2.7221 3.9438 12 14 9.6726 2.9189 3.2865 13 1 10.1983 4.1748 2.6936 14 1 9.9023 2.9296 4.7536 15 1 10.3734 1.7561 2.6847 16 6 3.2506 3.6490 0.0012 17 6 1.8771 3.5096 0.0003 18 7 1.3186 2.3140 0.0001 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 4.0228 0.3695 -0.0101 23 1 5.8467 3.5419 -0.5110 24 1 5.9810 1.7670 -0.5117 25 1 5.4083 2.6149 2.1207 26 1 7.3096 2.7424 4.8585 27 1 3.6994 4.6313 0.0022 28 1 1.2518 4.3902 -0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062070396.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:39 Heat of formation + Delta-G solvation = -13.846036 kcal Electronic energy + Delta-G solvation = -12909.070220 eV Core-core repulsion = 10538.946748 eV Total energy + Delta-G solvation = -2370.123472 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.58440 -39.01887 -36.78631 -34.33457 -32.19880 -31.62125 -28.41089 -27.44128 -24.90595 -24.32333 -22.47936 -19.52604 -18.63928 -18.00540 -16.99826 -16.89464 -16.61089 -15.66484 -15.39643 -15.24672 -14.90991 -14.27047 -13.97308 -13.42182 -13.09118 -12.82533 -12.72155 -12.53896 -12.16110 -12.14524 -11.90671 -10.98946 -10.69070 -10.66526 -9.48094 -9.06692 -7.96566 -5.28047 0.17401 0.25002 1.48729 1.52186 1.58313 2.13573 2.54990 2.79586 3.36411 3.38043 3.80470 4.07958 4.15376 4.18032 4.28813 4.45408 4.47600 4.68978 4.76048 4.84678 4.89677 4.95776 5.44501 5.47664 5.53254 6.23000 6.26184 6.83190 7.30134 8.00122 8.25523 9.26664 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.055323 B = 0.006535 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.997744 B = 4283.352024 C = 4454.598597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.324 6.324 3 C 0.303 3.697 4 C -0.190 4.190 5 C -0.015 4.015 6 C 0.187 3.813 7 N -0.739 5.739 8 C -0.251 4.251 9 H 0.082 0.918 10 C -0.074 4.074 11 N -0.970 5.970 12 Si 0.979 3.021 13 H -0.274 1.274 14 H -0.296 1.296 15 H -0.277 1.277 16 C -0.196 4.196 17 C 0.137 3.863 18 N -0.550 5.550 19 H 0.122 0.878 20 H 0.054 0.946 21 H 0.061 0.939 22 H 0.135 0.865 23 H 0.048 0.952 24 H 0.037 0.963 25 H 0.373 0.627 26 H 0.252 0.748 27 H 0.152 0.848 28 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.390 -0.756 -9.452 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.232 6.232 3 C 0.125 3.875 4 C -0.211 4.211 5 C -0.023 4.023 6 C 0.062 3.938 7 N -0.382 5.382 8 C -0.382 4.382 9 H 0.100 0.900 10 C -0.266 4.266 11 N -0.620 5.620 12 Si 0.807 3.193 13 H -0.200 1.200 14 H -0.222 1.222 15 H -0.203 1.203 16 C -0.216 4.216 17 C -0.018 4.018 18 N -0.275 5.275 19 H 0.141 0.859 20 H 0.073 0.927 21 H 0.079 0.921 22 H 0.152 0.848 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.205 0.795 26 H 0.061 0.939 27 H 0.169 0.831 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.012 -1.104 -9.517 15.365 hybrid contribution 1.406 0.082 0.759 1.600 sum -10.606 -1.022 -8.759 13.793 Atomic orbital electron populations 1.23066 0.75724 1.04633 1.02309 1.86216 1.24570 1.24384 1.87985 1.19875 0.89255 0.85280 0.93082 1.21031 0.92283 0.99390 1.08427 1.20380 0.96592 0.92662 0.92647 1.19776 0.87171 0.99688 0.87199 1.42470 1.04591 1.89250 1.01913 1.19652 0.84623 1.41648 0.92292 0.89966 1.25645 1.02316 1.03232 0.95422 1.69838 1.34905 1.58923 0.98379 0.85135 0.79540 0.78370 0.76226 1.19998 1.22248 1.20276 1.22165 0.94983 0.99784 1.04704 1.22928 0.92792 0.94130 0.91942 1.67346 1.40933 0.99119 1.20059 0.85940 0.92738 0.92052 0.84752 0.93426 0.94543 0.79535 0.93907 0.83077 0.78660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.38 113.37 1.18 1.97 15 2 O -0.32 -9.79 10.48 -89.96 -0.94 -10.73 15 3 C 0.30 10.05 7.49 84.79 0.63 10.68 15 4 C -0.19 -6.71 9.74 22.47 0.22 -6.49 15 5 C -0.01 -0.53 5.28 -19.69 -0.10 -0.63 15 6 C 0.19 7.57 6.43 85.63 0.55 8.12 15 7 N -0.74 -38.13 5.59 -347.18 -1.94 -40.07 15 8 C -0.25 -14.00 9.99 84.03 0.84 -13.16 15 9 H 0.08 4.32 7.83 -2.91 -0.02 4.29 15 10 C -0.07 -4.25 5.50 84.86 0.47 -3.78 15 11 N -0.97 -59.97 13.06 21.65 0.28 -59.69 15 12 Si 0.98 45.88 29.55 68.60 2.03 47.91 15 13 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 14 H -0.30 -14.03 7.11 99.48 0.71 -13.32 15 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 16 C -0.20 -5.89 9.81 22.37 0.22 -5.67 15 17 C 0.14 3.65 11.18 84.63 0.95 4.60 15 18 N -0.55 -16.69 9.22 -308.94 -2.85 -19.54 15 19 H 0.12 1.80 8.14 -2.39 -0.02 1.78 15 20 H 0.05 1.18 8.10 -2.39 -0.02 1.16 15 21 H 0.06 1.22 8.10 -2.38 -0.02 1.21 15 22 H 0.13 4.73 8.06 -2.91 -0.02 4.71 15 23 H 0.05 1.82 8.10 -2.38 -0.02 1.80 15 24 H 0.04 1.46 8.10 -2.39 -0.02 1.44 15 25 H 0.37 20.88 7.66 -92.71 -0.71 20.17 15 26 H 0.25 15.10 8.31 -92.71 -0.77 14.33 15 27 H 0.15 4.05 8.06 -2.91 -0.02 4.03 15 28 H 0.20 3.52 8.06 -2.91 -0.02 3.49 15 Total: -1.00 -66.69 253.55 1.98 -64.71 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.45 Total: 21.78 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 4.95 Total: -4.37 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -4.51 Total: -119.29 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.94 Total: -10.73 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -66.69 1.98 -64.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062070396.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.866 kcal (2) G-P(sol) polarization free energy of solvation -66.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds