Wall clock time and date at job start Mon Mar 30 2020 02:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.46784 * 90.00060 * 7 6 5 9 9 C 1.36933 * 119.99575 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00208 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99595 * 180.02562 * 9 8 7 12 12 N 1.31613 * 120.00416 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99905 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47328 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47378 * 120.00035 * 13 11 9 16 16 H 1.48508 * 109.47207 * 240.00150 * 13 11 9 17 17 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 18 18 N 1.31967 * 120.83264 * 0.02562 * 17 6 5 19 19 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 20 20 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 22 22 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 23 23 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 24 24 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 25 25 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 26 26 H 0.96998 * 119.99730 * 0.02562 * 8 7 6 27 27 H 0.97002 * 120.00725 * 180.02562 * 12 11 9 28 28 H 1.07994 * 119.58392 * 179.97438 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 7 4.0793 5.4642 -1.3797 9 6 4.6392 6.6885 -1.6299 10 1 4.9313 7.3266 -0.8090 11 6 4.8305 7.1097 -2.9386 12 7 4.4733 6.3327 -3.9390 13 14 5.5937 8.7802 -3.2800 14 1 5.9028 9.4554 -1.9940 15 1 6.8449 8.6028 -4.0598 16 1 4.6393 9.6108 -4.0577 17 6 1.8772 3.5097 0.0021 18 7 1.3187 2.3141 0.0026 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 4.0229 0.3694 -0.0035 23 1 5.1255 2.5946 0.0011 24 1 3.2187 5.7201 0.5158 25 1 4.8376 4.9803 0.5150 26 1 3.8167 4.8911 -2.1169 27 1 4.6072 6.6268 -4.8536 28 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062070792.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:41 Heat of formation + Delta-G solvation = -13.901096 kcal Electronic energy + Delta-G solvation = -12871.849196 eV Core-core repulsion = 10501.723336 eV Total energy + Delta-G solvation = -2370.125860 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.58887 -39.05592 -36.57613 -34.00358 -33.08846 -31.34108 -28.44402 -26.98512 -24.82360 -24.29961 -22.59087 -19.37116 -19.30772 -18.04148 -16.99127 -16.77207 -16.20265 -15.47554 -15.29988 -15.24379 -14.74824 -14.23530 -13.98069 -13.90680 -13.13636 -12.83243 -12.77826 -12.40092 -12.13477 -12.01879 -11.81405 -11.01246 -10.83659 -10.61340 -9.41549 -9.01424 -7.94170 -5.24263 0.15777 0.28965 1.49715 1.50257 1.60604 2.14854 2.55905 2.77954 3.35797 3.39759 3.90415 4.07322 4.07723 4.25344 4.27963 4.44273 4.49055 4.67178 4.76224 4.93369 4.96466 4.99823 5.45742 5.48447 5.51397 6.23192 6.26504 6.82381 7.33447 8.06307 8.30724 9.29447 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.068593 B = 0.006131 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.106177 B = 4565.832603 C = 4642.167632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.318 6.318 3 C 0.297 3.703 4 C -0.190 4.190 5 C -0.028 4.028 6 C -0.177 4.177 7 C 0.199 3.801 8 N -0.741 5.741 9 C -0.243 4.243 10 H 0.082 0.918 11 C -0.077 4.077 12 N -0.971 5.971 13 Si 0.976 3.024 14 H -0.263 1.263 15 H -0.294 1.294 16 H -0.295 1.295 17 C 0.143 3.857 18 N -0.553 5.553 19 H 0.050 0.950 20 H 0.126 0.874 21 H 0.056 0.944 22 H 0.164 0.836 23 H 0.156 0.844 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.372 0.628 27 H 0.251 0.749 28 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 -10.567 9.689 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C 0.118 3.882 4 C -0.210 4.210 5 C -0.054 4.054 6 C -0.179 4.179 7 C 0.072 3.928 8 N -0.384 5.384 9 C -0.375 4.375 10 H 0.100 0.900 11 C -0.269 4.269 12 N -0.622 5.622 13 Si 0.805 3.195 14 H -0.187 1.187 15 H -0.221 1.221 16 H -0.222 1.222 17 C -0.012 4.012 18 N -0.277 5.277 19 H 0.068 0.932 20 H 0.145 0.855 21 H 0.075 0.925 22 H 0.182 0.818 23 H 0.174 0.826 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.203 0.797 27 H 0.059 0.941 28 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.423 -10.752 9.778 15.512 hybrid contribution 0.818 0.910 -0.826 1.477 sum -4.605 -9.841 8.951 14.078 Atomic orbital electron populations 1.23045 0.76046 1.04661 1.02043 1.86203 1.24245 1.24084 1.88030 1.20142 0.90147 0.84930 0.93001 1.21292 0.91771 1.00075 1.07848 1.21596 1.01476 0.90457 0.91855 1.20950 0.95018 0.96899 1.05072 1.19587 0.97278 0.89287 0.86607 1.42611 1.74692 1.18763 1.02334 1.19722 1.31260 0.94335 0.92147 0.90003 1.25604 1.03405 1.02321 0.95557 1.69841 1.55201 1.38873 0.98294 0.85041 0.77133 0.79417 0.77954 1.18700 1.22144 1.22227 1.22449 0.92676 0.93656 0.92426 1.67309 1.41268 0.98989 1.20112 0.93167 0.85549 0.92479 0.81841 0.82648 0.94420 0.94260 0.79658 0.94056 0.81811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.38 113.37 1.18 1.93 15 2 O -0.32 -8.62 10.48 -89.90 -0.94 -9.56 15 3 C 0.30 9.11 7.49 84.79 0.63 9.74 15 4 C -0.19 -5.30 10.04 22.47 0.23 -5.08 15 5 C -0.03 -0.84 9.85 22.45 0.22 -0.62 15 6 C -0.18 -6.04 5.26 -19.77 -0.10 -6.14 15 7 C 0.20 7.75 6.41 85.63 0.55 8.30 15 8 N -0.74 -37.43 5.59 -347.17 -1.94 -39.38 15 9 C -0.24 -13.39 9.99 84.03 0.84 -12.55 15 10 H 0.08 4.26 7.83 -2.91 -0.02 4.24 15 11 C -0.08 -4.39 5.50 84.86 0.47 -3.93 15 12 N -0.97 -59.81 13.06 21.65 0.28 -59.53 15 13 Si 0.98 45.82 29.55 68.60 2.03 47.84 15 14 H -0.26 -11.46 7.11 99.48 0.71 -10.76 15 15 H -0.29 -13.83 7.11 99.48 0.71 -13.13 15 16 H -0.29 -13.91 7.11 99.48 0.71 -13.21 15 17 C 0.14 4.78 10.85 84.63 0.92 5.70 15 18 N -0.55 -18.13 9.22 -308.95 -2.85 -20.98 15 19 H 0.05 1.11 8.11 -2.38 -0.02 1.09 15 20 H 0.13 1.68 8.14 -2.39 -0.02 1.66 15 21 H 0.06 1.17 8.10 -2.39 -0.02 1.15 15 22 H 0.16 3.61 8.06 -2.91 -0.02 3.58 15 23 H 0.16 4.14 8.06 -2.91 -0.02 4.11 15 24 H 0.04 1.43 8.09 -2.39 -0.02 1.41 15 25 H 0.04 1.47 8.09 -2.39 -0.02 1.45 15 26 H 0.37 20.46 7.66 -92.71 -0.71 19.75 15 27 H 0.25 14.94 8.31 -92.71 -0.77 14.17 15 28 H 0.16 5.10 8.06 -2.91 -0.02 5.08 15 Total: -1.00 -65.61 253.50 1.96 -63.66 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.45 Total: 20.59 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 4.93 Total: -2.65 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -4.51 Total: -119.88 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.94 Total: -9.56 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -65.61 1.96 -63.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062070792.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.757 kcal (2) G-P(sol) polarization free energy of solvation -65.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds