Wall clock time and date at job start Mon Mar 30 2020 02:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31252 * 1 3 3 Si 1.86798 * 120.00439 * 2 1 4 4 H 1.48504 * 109.46799 * 269.99793 * 3 2 1 5 5 H 1.48499 * 109.47080 * 29.99894 * 3 2 1 6 6 H 1.48499 * 109.47098 * 149.99621 * 3 2 1 7 7 C 1.39016 * 119.99319 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99189 * 180.02562 * 7 2 1 9 9 N 1.37565 * 120.00144 * 359.72458 * 7 2 1 10 10 N 1.40325 * 126.88876 * 353.34171 * 9 7 2 11 11 N 1.28754 * 108.03024 * 180.02562 * 10 9 7 12 12 C 1.33459 * 109.98745 * 359.97438 * 11 10 9 13 13 C 1.50701 * 125.48173 * 179.97438 * 12 11 10 14 14 N 1.46907 * 109.46822 * 89.98736 * 13 12 11 15 15 C 1.34943 * 109.02712 * 359.73750 * 12 11 10 16 16 C 1.50704 * 126.63757 * 180.28943 * 15 12 11 17 17 C 1.52999 * 117.49705 * 134.55727 * 16 15 12 18 18 C 1.52997 * 117.49565 * 65.93243 * 16 15 12 19 19 H 0.97004 * 119.99551 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.46865 * 209.97664 * 13 12 11 21 21 H 1.08998 * 109.47769 * 329.98222 * 13 12 11 22 22 H 1.00896 * 111.00174 * 56.03823 * 14 13 12 23 23 H 1.00897 * 110.99683 * 179.97438 * 14 13 12 24 24 H 1.08998 * 115.54667 * 280.26210 * 16 15 12 25 25 H 1.09001 * 117.50003 * 359.97438 * 17 16 15 26 26 H 1.08997 * 117.49874 * 145.02326 * 17 16 15 27 27 H 1.09000 * 117.49944 * 214.97883 * 18 16 15 28 28 H 1.08998 * 117.50542 * 0.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6176 0.0000 4 1 2.4942 2.0462 -1.4001 5 1 1.4441 2.6526 0.7000 6 1 3.5441 1.4400 0.7001 7 6 2.0075 -1.2040 0.0005 8 1 3.0875 -1.2040 0.0010 9 7 1.3195 -2.3953 0.0068 10 7 -0.0665 -2.5669 0.1432 11 7 -0.3180 -3.8289 0.1001 12 6 0.8159 -4.5148 -0.0575 13 6 0.9249 -6.0150 -0.1513 14 7 0.8143 -6.4270 -1.5571 15 6 1.8484 -3.6486 -0.1247 16 6 3.3036 -3.9962 -0.3059 17 6 4.1030 -3.1811 -1.3245 18 6 3.7184 -4.6290 -1.6357 19 1 -0.4850 0.8401 -0.0004 20 1 1.8881 -6.3348 0.2463 21 1 0.1227 -6.4744 0.4262 22 1 1.5076 -5.9638 -2.1252 23 1 0.8849 -7.4295 -1.6466 24 1 3.8232 -4.3278 0.5930 25 1 3.5764 -2.3938 -1.8638 26 1 5.1489 -2.9763 -1.0957 27 1 4.5112 -5.3766 -1.6117 28 1 2.9390 -4.7935 -2.3797 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062295949.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:56 Heat of formation + Delta-G solvation = 86.320769 kcal Electronic energy + Delta-G solvation = -13689.046794 eV Core-core repulsion = 11355.559631 eV Total energy + Delta-G solvation = -2333.487163 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.16407 -37.86473 -36.32396 -35.14763 -33.06407 -30.53611 -27.81413 -25.37944 -24.25180 -23.35538 -22.32730 -20.35879 -19.34936 -17.47602 -16.83054 -16.58818 -16.08342 -15.57550 -15.13569 -14.91004 -14.52970 -13.83880 -13.51702 -13.07073 -12.96141 -12.75675 -12.27543 -12.10948 -11.76682 -11.62741 -11.49071 -11.30191 -10.76364 -10.54315 -9.51191 -9.14812 -8.68325 -6.59147 1.08989 1.35468 1.55270 1.62120 2.04841 2.16366 2.65093 2.92212 3.10143 3.91497 4.01142 4.05299 4.15425 4.21714 4.41197 4.64400 4.78869 4.82310 4.97875 5.04260 5.17105 5.30169 5.32532 5.37335 5.99180 6.00534 6.33027 6.63917 6.80322 7.24465 8.26189 8.33425 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.038288 B = 0.011855 C = 0.009482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.125803 B = 2361.255911 C = 2952.201144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C -0.004 4.004 3 Si 1.023 2.977 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.240 1.240 7 C -0.333 4.333 8 H 0.145 0.855 9 N -0.156 5.156 10 N -0.161 5.161 11 N -0.357 5.357 12 C -0.065 4.065 13 C 0.171 3.829 14 N -0.852 5.852 15 C -0.065 4.065 16 C -0.084 4.084 17 C -0.170 4.170 18 C -0.145 4.145 19 H 0.285 0.715 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.341 0.659 23 H 0.353 0.647 24 H 0.123 0.877 25 H 0.071 0.929 26 H 0.125 0.875 27 H 0.133 0.867 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.093 -4.788 -2.235 13.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.218 4.218 3 Si 0.840 3.160 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.163 1.163 7 C -0.469 4.469 8 H 0.162 0.838 9 N 0.072 4.928 10 N -0.136 5.136 11 N -0.214 5.214 12 C -0.215 4.215 13 C 0.038 3.962 14 N -0.386 5.386 15 C -0.201 4.201 16 C -0.104 4.104 17 C -0.207 4.207 18 C -0.182 4.182 19 H 0.096 0.904 20 H 0.075 0.925 21 H 0.085 0.915 22 H 0.155 0.845 23 H 0.168 0.832 24 H 0.141 0.859 25 H 0.090 0.910 26 H 0.143 0.857 27 H 0.151 0.849 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.625 -3.677 -1.982 10.492 hybrid contribution 1.428 0.168 0.142 1.445 sum 11.052 -3.509 -1.840 11.741 Atomic orbital electron populations 1.70322 1.08820 1.30326 1.34568 1.27122 0.96473 1.04892 0.93348 0.84548 0.78463 0.73267 0.79757 1.18266 1.19755 1.16274 1.20901 0.93495 0.80671 1.51830 0.83775 1.46934 1.06685 1.05740 1.33445 1.82488 0.90827 1.07942 1.32312 1.73953 1.27190 1.00947 1.19348 1.21226 0.88125 0.97601 1.14509 1.19640 1.00003 0.86486 0.90031 1.58593 1.59079 1.12369 1.08596 1.20941 0.96604 0.84773 1.17732 1.20097 0.87604 1.07301 0.95374 1.22986 1.00854 0.94753 1.02087 1.23070 1.02939 0.96326 0.95901 0.90444 0.92491 0.91472 0.84504 0.83211 0.85922 0.90995 0.85718 0.84869 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.34 11.91 21.66 0.26 -46.08 15 2 C 0.00 -0.20 5.50 84.97 0.47 0.26 15 3 Si 1.02 37.01 29.55 68.60 2.03 39.04 15 4 H -0.26 -8.90 7.11 99.48 0.71 -8.20 15 5 H -0.27 -9.76 7.11 99.48 0.71 -9.06 15 6 H -0.24 -7.81 7.11 99.48 0.71 -7.11 15 7 C -0.33 -17.34 9.27 83.98 0.78 -16.56 15 8 H 0.14 6.55 6.57 -2.91 -0.02 6.53 15 9 N -0.16 -8.83 3.78 -178.49 -0.67 -9.50 15 10 N -0.16 -10.20 11.76 37.02 0.44 -9.77 15 11 N -0.36 -21.13 12.33 -48.99 -0.60 -21.73 15 12 C -0.07 -3.20 6.61 41.55 0.27 -2.93 15 13 C 0.17 6.23 7.10 85.56 0.61 6.84 15 14 N -0.85 -27.24 9.61 -189.99 -1.83 -29.07 15 15 C -0.06 -3.10 6.43 41.05 0.26 -2.84 15 16 C -0.08 -2.87 5.51 -11.54 -0.06 -2.93 15 17 C -0.17 -5.07 8.87 30.60 0.27 -4.80 15 18 C -0.14 -3.79 9.89 30.60 0.30 -3.49 15 19 H 0.29 14.79 8.31 -92.71 -0.77 14.02 15 20 H 0.06 1.73 7.87 -2.39 -0.02 1.72 15 21 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 22 H 0.34 10.48 6.74 -89.70 -0.60 9.87 15 23 H 0.35 8.37 9.08 -89.70 -0.81 7.56 15 24 H 0.12 3.71 8.14 -2.39 -0.02 3.69 15 25 H 0.07 2.60 7.46 -2.39 -0.02 2.58 15 26 H 0.12 2.86 8.14 -2.39 -0.02 2.84 15 27 H 0.13 2.41 8.14 -2.39 -0.02 2.39 15 28 H 0.08 2.33 6.33 -2.39 -0.02 2.32 15 Total: -1.00 -74.24 244.36 2.30 -71.94 By element: Atomic # 1 Polarization: 31.83 SS G_CDS: -0.22 Total: 31.62 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 2.90 Total: -26.45 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -2.41 Total: -116.15 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Total: -74.24 2.30 -71.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295949.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.259 kcal (2) G-P(sol) polarization free energy of solvation -74.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds