Wall clock time and date at job start Mon Mar 30 2020 02:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99845 * 2 1 4 4 H 1.48504 * 109.46633 * 90.00135 * 3 2 1 5 5 H 1.48492 * 109.47049 * 209.99618 * 3 2 1 6 6 H 1.48495 * 109.47024 * 330.00381 * 3 2 1 7 7 C 1.37869 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00673 * 185.43050 * 7 2 1 9 9 C 1.50699 * 119.99994 * 5.42641 * 7 2 1 10 10 C 1.53001 * 115.55224 * 279.44295 * 9 7 2 11 11 N 1.46500 * 109.46903 * 295.26199 * 10 9 7 12 12 C 1.34340 * 126.76234 * 123.97885 * 11 10 9 13 13 N 1.30883 * 108.21206 * 179.89149 * 12 11 10 14 14 C 1.33652 * 109.77000 * 0.38567 * 13 12 11 15 15 N 1.39606 * 125.60916 * 179.72838 * 14 13 12 16 16 N 1.31201 * 108.77924 * 359.75951 * 14 13 12 17 17 C 1.53004 * 117.49905 * 133.73112 * 9 7 2 18 18 C 1.53006 * 117.49737 * 65.10863 * 9 7 2 19 19 H 0.97000 * 119.99728 * 355.37528 * 1 2 3 20 20 H 1.09000 * 109.47381 * 55.26395 * 10 9 7 21 21 H 1.09000 * 109.47209 * 175.26486 * 10 9 7 22 22 H 1.07995 * 125.89253 * 0.02562 * 12 11 10 23 23 H 0.96994 * 119.99751 * 180.02562 * 15 14 13 24 24 H 0.97004 * 120.00309 * 0.03707 * 15 14 13 25 25 H 1.08997 * 117.49937 * 0.02562 * 17 9 7 26 26 H 1.09004 * 117.49778 * 145.02724 * 17 9 7 27 27 H 1.09001 * 117.50081 * 214.98034 * 18 9 7 28 28 H 1.09003 * 117.49758 * 0.02562 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.6999 6 1 1.4466 2.6527 -0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0810 -1.1961 0.0880 9 6 1.2562 -2.4961 -0.1245 10 6 0.6213 -3.0179 1.1660 11 7 1.6742 -3.3432 2.1314 12 6 1.7990 -2.8594 3.3784 13 7 2.8647 -3.3929 3.9194 14 6 3.4514 -4.2163 3.0452 15 7 4.6142 -4.9534 3.2771 16 7 2.7551 -4.2175 1.9332 17 6 1.7964 -3.5298 -1.1148 18 6 0.5126 -2.7615 -1.4351 19 1 -0.4850 0.8373 0.0677 20 1 -0.0319 -2.2524 1.5850 21 1 0.0388 -3.9131 0.9483 22 1 1.1336 -2.1538 3.8534 23 1 4.9707 -5.5280 2.5818 24 1 5.0654 -4.8909 4.1335 25 1 2.6933 -3.2683 -1.6762 26 1 1.6996 -4.5820 -0.8469 27 1 -0.4287 -3.3081 -1.3780 28 1 0.5651 -1.9944 -2.2078 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854503.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:42 Heat of formation + Delta-G solvation = 118.070372 kcal Electronic energy + Delta-G solvation = -13569.000173 eV Core-core repulsion = 11236.889777 eV Total energy + Delta-G solvation = -2332.110396 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.10540 -36.78912 -34.16495 -32.07783 -31.58566 -29.73907 -26.18057 -25.24814 -21.54644 -21.06919 -20.53578 -19.21464 -16.67742 -16.17705 -15.92168 -14.99872 -14.72099 -14.52367 -13.73275 -13.35631 -13.11504 -12.04525 -11.90228 -11.12202 -11.02219 -10.82410 -10.64969 -10.39329 -10.24276 -9.67887 -9.21635 -9.01230 -8.81534 -8.53745 -8.20160 -7.56248 -6.14836 -4.19923 2.58898 3.16701 3.24135 3.31383 3.36553 3.85606 4.09976 4.33811 5.13312 5.15972 5.42641 5.65164 5.97425 6.14512 6.27885 6.43107 6.62541 6.68487 6.80258 7.01272 7.17705 7.30029 7.42415 7.69967 7.79452 7.94074 7.96912 8.34404 8.82569 9.09918 9.46733 10.93624 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.030936 B = 0.011646 C = 0.010021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.868278 B = 2403.606971 C = 2793.531966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.072 3.928 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.285 1.285 7 C -0.487 4.487 8 H 0.056 0.944 9 C 0.031 3.969 10 C 0.168 3.832 11 N -0.334 5.334 12 C 0.270 3.730 13 N -0.593 5.593 14 C 0.446 3.554 15 N -0.835 5.835 16 N -0.355 5.355 17 C -0.188 4.188 18 C -0.157 4.157 19 H 0.262 0.738 20 H 0.106 0.894 21 H 0.057 0.943 22 H 0.209 0.791 23 H 0.407 0.593 24 H 0.406 0.594 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 -5.528 4.035 7.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.199 1.199 6 H -0.211 1.211 7 C -0.524 4.524 8 H 0.075 0.925 9 C 0.030 3.970 10 C 0.047 3.953 11 N -0.122 5.122 12 C -0.027 4.027 13 N -0.329 5.329 14 C 0.075 3.925 15 N -0.392 5.392 16 N -0.194 5.194 17 C -0.225 4.225 18 C -0.196 4.196 19 H 0.072 0.928 20 H 0.124 0.876 21 H 0.075 0.925 22 H 0.226 0.774 23 H 0.236 0.764 24 H 0.236 0.764 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.676 -5.658 3.589 6.906 hybrid contribution 0.506 1.073 0.050 1.187 sum 2.182 -4.585 3.638 6.247 Atomic orbital electron populations 1.69938 1.05758 1.26970 1.49399 1.24959 0.94858 0.98877 0.94401 0.86621 0.80036 0.83355 0.78292 1.20548 1.19891 1.21053 1.20375 0.92800 0.88451 1.50799 0.92541 1.18915 0.98350 0.94154 0.85576 1.21569 0.85177 0.98453 0.90122 1.50038 1.19867 1.30840 1.11465 1.25529 0.95320 0.97389 0.84489 1.70095 1.11214 1.17800 1.33785 1.20455 0.90566 0.93001 0.88517 1.40737 1.26225 1.52430 1.19820 1.78112 1.02106 1.19177 1.20026 1.22835 0.97302 0.95850 1.06538 1.22623 0.93282 1.01793 1.01855 0.92826 0.87620 0.92481 0.77431 0.76381 0.76434 0.90671 0.91226 0.91687 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.41 13.10 55.43 0.73 -22.68 15 2 C 0.07 1.89 5.42 -17.82 -0.10 1.80 15 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.49 -13.01 8.71 -34.44 -0.30 -13.31 15 8 H 0.06 1.61 7.82 -52.48 -0.41 1.20 15 9 C 0.03 0.74 1.39 -155.65 -0.22 0.53 15 10 C 0.17 3.57 6.37 -4.04 -0.03 3.55 15 11 N -0.33 -7.03 3.58 -62.64 -0.22 -7.26 15 12 C 0.27 5.20 12.61 -90.69 -1.14 4.06 15 13 N -0.59 -11.84 11.21 -14.98 -0.17 -12.01 15 14 C 0.45 8.80 9.44 -321.17 -3.03 5.77 15 15 N -0.84 -12.28 9.13 30.00 0.27 -12.00 15 16 N -0.36 -7.67 12.60 29.99 0.38 -7.30 15 17 C -0.19 -4.17 9.96 -26.73 -0.27 -4.43 15 18 C -0.16 -3.54 9.67 -26.72 -0.26 -3.79 15 19 H 0.26 6.67 8.32 -40.82 -0.34 6.33 15 20 H 0.11 2.25 8.08 -51.93 -0.42 1.83 15 21 H 0.06 1.12 8.10 -51.93 -0.42 0.70 15 22 H 0.21 3.18 8.06 -52.49 -0.42 2.75 15 23 H 0.41 5.14 8.96 -40.82 -0.37 4.77 15 24 H 0.41 4.97 8.96 -40.82 -0.37 4.60 15 25 H 0.07 1.70 8.14 -51.93 -0.42 1.28 15 26 H 0.07 1.47 8.14 -51.93 -0.42 1.04 15 27 H 0.06 1.34 8.14 -51.93 -0.42 0.91 15 28 H 0.08 1.98 8.14 -51.93 -0.42 1.55 15 LS Contribution 254.91 15.07 3.84 3.84 Total: -1.00 -30.12 254.91 -8.76 -38.88 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -3.23 Total: 8.52 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -5.34 Total: -5.84 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: 0.99 Total: -61.25 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.12 -8.76 -38.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854503.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.951 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds