Wall clock time and date at job start Mon Mar 30 2020 02:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.32054 * 119.56269 * 2 1 4 4 C 1.32432 * 119.52814 * 179.97438 * 3 2 1 5 5 C 1.38763 * 118.72930 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.43626 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46943 * 64.95665 * 6 5 4 8 8 N 1.46895 * 109.47252 * 304.95551 * 6 5 4 9 9 C 1.50708 * 109.46851 * 184.95534 * 6 5 4 10 10 H 1.07996 * 119.99667 * 0.02562 * 9 6 5 11 11 C 1.37869 * 119.99822 * 180.02562 * 9 6 5 12 12 N 1.31522 * 120.00407 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 120.00233 * 180.02562 * 11 9 6 14 14 H 1.48508 * 109.46798 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47306 * 119.99161 * 13 11 9 16 16 H 1.48496 * 109.47341 * 239.99950 * 13 11 9 17 17 N 1.32190 * 119.11884 * 359.97438 * 5 4 3 18 18 N 1.28739 * 120.39583 * 0.02562 * 17 5 4 19 19 H 1.08989 * 109.47038 * 90.00215 * 1 2 3 20 20 H 1.08995 * 109.46852 * 210.00316 * 1 2 3 21 21 H 1.09007 * 109.46921 * 329.99849 * 1 2 3 22 22 H 1.07993 * 120.63935 * 179.97438 * 4 3 2 23 23 H 1.09008 * 109.47252 * 59.99946 * 7 6 5 24 24 H 1.08998 * 109.47265 * 179.97438 * 7 6 5 25 25 H 1.08990 * 109.47420 * 299.99857 * 7 6 5 26 26 H 1.00903 * 110.99843 * 176.04507 * 8 6 5 27 27 H 1.00899 * 111.00308 * 299.99688 * 8 6 5 28 28 H 0.96992 * 120.00245 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1586 1.1486 0.0000 4 6 3.4829 1.1478 0.0005 5 6 4.1492 -0.0694 0.0016 6 6 5.6555 -0.1152 0.0028 7 6 6.1827 0.4803 1.3098 8 7 6.1699 0.6625 -1.1323 9 6 6.1146 -1.5454 -0.1189 10 1 5.3883 -2.3414 -0.1905 11 6 7.4618 -1.8376 -0.1390 12 7 8.3464 -0.8681 -0.0524 13 14 8.0311 -3.6103 -0.2906 14 1 6.8483 -4.5047 -0.3722 15 1 8.8532 -3.7630 -1.5177 16 1 8.8439 -3.9726 0.8982 17 7 3.4450 -1.1881 0.0026 18 7 2.1582 -1.1479 0.0020 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 4.0338 2.0767 0.0001 23 1 5.8010 -0.0969 2.1521 24 1 7.2722 0.4467 1.3109 25 1 5.8507 1.5146 1.3979 26 1 7.1781 0.7010 -1.1169 27 1 5.8357 0.2888 -2.0078 28 1 9.2942 -1.0736 -0.0669 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084333547.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:34 Heat of formation + Delta-G solvation = 68.560810 kcal Electronic energy + Delta-G solvation = -13603.073013 eV Core-core repulsion = 11268.815721 eV Total energy + Delta-G solvation = -2334.257292 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.22067 -36.27448 -34.39406 -32.86368 -31.20465 -28.51217 -27.25722 -25.70167 -24.64921 -23.22739 -19.92909 -18.27820 -16.03681 -16.02942 -15.32420 -15.27370 -14.24483 -13.41413 -13.19561 -13.09975 -12.71659 -12.42128 -11.98553 -11.54181 -11.20854 -11.03602 -10.97787 -10.76776 -10.63022 -10.30133 -9.90575 -9.84119 -9.11733 -8.73928 -8.53525 -7.37796 -6.12902 -4.25583 1.15504 1.36936 3.23186 3.32395 3.40629 4.07553 4.18185 4.31257 4.34916 4.82611 5.11443 5.36495 5.52119 5.60243 5.71295 5.91454 6.12490 6.29620 6.57840 6.76809 6.82940 7.20441 7.46742 7.65547 7.87376 8.04084 8.49511 8.89822 8.93123 9.15389 9.47171 10.85505 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.047346 B = 0.010068 C = 0.008799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.252108 B = 2780.305107 C = 3181.384914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.217 3.783 3 N -0.484 5.484 4 C 0.136 3.864 5 C 0.062 3.938 6 C 0.280 3.720 7 C -0.125 4.125 8 N -0.845 5.845 9 C -0.533 4.533 10 H 0.077 0.923 11 C 0.066 3.934 12 N -0.898 5.898 13 Si 0.899 3.101 14 H -0.271 1.271 15 H -0.285 1.285 16 H -0.284 1.284 17 N -0.170 5.170 18 N -0.292 5.292 19 H 0.082 0.918 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.183 0.817 23 H 0.032 0.968 24 H 0.097 0.903 25 H 0.021 0.979 26 H 0.365 0.635 27 H 0.316 0.684 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.716 3.493 0.029 8.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 N -0.205 5.205 4 C -0.041 4.041 5 C -0.087 4.087 6 C 0.187 3.813 7 C -0.184 4.184 8 N -0.376 5.376 9 C -0.573 4.573 10 H 0.095 0.905 11 C -0.136 4.136 12 N -0.538 5.538 13 Si 0.727 3.273 14 H -0.195 1.195 15 H -0.211 1.211 16 H -0.210 1.210 17 N -0.019 5.019 18 N -0.138 5.138 19 H 0.100 0.900 20 H 0.102 0.898 21 H 0.100 0.900 22 H 0.200 0.800 23 H 0.051 0.949 24 H 0.115 0.885 25 H 0.040 0.960 26 H 0.183 0.817 27 H 0.125 0.875 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.535 3.213 0.375 9.127 hybrid contribution 1.393 -1.060 -0.344 1.784 sum -7.142 2.153 0.031 7.460 Atomic orbital electron populations 1.20428 0.85620 1.03844 1.03568 1.24544 0.99500 0.86682 0.94612 1.68824 1.09525 1.30275 1.11883 1.24087 0.89746 1.00721 0.89592 1.24351 1.01984 0.90321 0.92006 1.17214 0.80194 0.93279 0.90661 1.21769 1.05146 0.95996 0.95501 1.59381 1.18098 1.56008 1.04141 1.21953 0.92320 0.93069 1.49988 0.90458 1.24959 0.96543 0.97752 0.94296 1.69659 1.01646 1.31322 1.51145 0.86405 0.78644 0.84724 0.77523 1.19519 1.21107 1.20984 1.73843 0.97988 1.26018 1.04031 1.73676 1.03320 1.25637 1.11201 0.89951 0.89769 0.89954 0.79987 0.94880 0.88487 0.95979 0.81656 0.87525 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.35 36.01 0.37 -0.56 15 2 C 0.22 3.88 7.71 -156.81 -1.21 2.67 15 3 N -0.48 -8.87 10.45 -10.57 -0.11 -8.98 15 4 C 0.14 2.59 10.37 -17.10 -0.18 2.42 15 5 C 0.06 1.36 5.78 -82.24 -0.48 0.89 15 6 C 0.28 6.52 0.71 -133.90 -0.10 6.43 15 7 C -0.13 -2.84 8.38 37.16 0.31 -2.53 15 8 N -0.84 -18.48 8.62 -1.14 -0.01 -18.49 15 9 C -0.53 -13.97 7.98 -34.44 -0.27 -14.24 15 10 H 0.08 2.15 6.62 -52.49 -0.35 1.80 15 11 C 0.07 1.70 5.22 -17.82 -0.09 1.61 15 12 N -0.90 -23.01 9.57 55.43 0.53 -22.48 15 13 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 15 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 15 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 17 N -0.17 -3.96 9.83 33.66 0.33 -3.63 15 18 N -0.29 -6.09 11.48 32.42 0.37 -5.72 15 19 H 0.08 0.89 8.14 -51.94 -0.42 0.47 15 20 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.18 3.08 7.94 -52.49 -0.42 2.66 15 23 H 0.03 0.74 8.14 -51.92 -0.42 0.32 15 24 H 0.10 2.37 6.07 -51.93 -0.32 2.05 15 25 H 0.02 0.43 7.77 -51.93 -0.40 0.03 15 26 H 0.37 8.50 7.00 -39.29 -0.27 8.23 15 27 H 0.32 6.87 8.98 -39.29 -0.35 6.52 15 28 H 0.26 6.55 8.31 -40.82 -0.34 6.21 15 LS Contribution 242.56 15.07 3.66 3.66 Total: -1.00 -27.39 242.56 -4.83 -32.22 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -2.94 Total: 10.91 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.64 Total: -3.31 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 1.11 Total: -59.30 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.39 -4.83 -32.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084333547.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.780 kcal (2) G-P(sol) polarization free energy of solvation -27.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds