Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46851 * 2 1 4 4 H 1.09002 * 109.47577 * 304.85515 * 3 2 1 5 5 C 1.50701 * 109.46971 * 184.86027 * 3 2 1 6 6 H 1.08001 * 119.99985 * 245.45268 * 5 3 2 7 7 C 1.37879 * 120.00327 * 65.44605 * 5 3 2 8 8 N 1.31511 * 119.99644 * 9.42986 * 7 5 3 9 9 Si 1.86798 * 120.00066 * 189.43733 * 7 5 3 10 10 H 1.48493 * 109.47358 * 84.99351 * 9 7 5 11 11 H 1.48501 * 109.46839 * 204.99281 * 9 7 5 12 12 H 1.48500 * 109.46987 * 324.99009 * 9 7 5 13 13 C 1.50699 * 109.47394 * 64.86155 * 3 2 1 14 14 C 1.38264 * 119.98879 * 240.00002 * 13 3 2 15 15 C 1.38226 * 120.05498 * 179.97438 * 14 13 3 16 16 C 1.38222 * 120.02103 * 359.97438 * 15 14 13 17 17 C 1.38432 * 119.97497 * 0.02562 * 16 15 14 18 18 F 1.35102 * 120.02302 * 180.02562 * 17 16 15 19 19 C 1.38173 * 119.98725 * 59.96928 * 13 3 2 20 20 H 1.09004 * 109.47062 * 59.99846 * 1 2 3 21 21 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47041 * 299.99844 * 1 2 3 23 23 H 1.09004 * 109.46880 * 240.00539 * 2 1 3 24 24 H 1.08994 * 109.47195 * 120.00312 * 2 1 3 25 25 H 0.97000 * 119.99939 * 179.97438 * 8 7 5 26 26 H 1.08002 * 119.97385 * 359.69434 * 14 13 3 27 27 H 1.07993 * 119.98855 * 179.97438 * 15 14 13 28 28 H 1.08004 * 120.00754 * 179.97438 * 16 15 14 29 29 H 1.08001 * 120.01705 * 0.05375 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6074 1.9809 -0.8433 5 6 3.5422 1.4443 -0.1204 6 1 4.1488 1.8093 0.6952 7 6 4.1421 0.9797 -1.2716 8 7 3.4112 0.7100 -2.3311 9 14 5.9930 0.7334 -1.3263 10 1 6.3305 -0.6055 -0.7799 11 1 6.4635 0.8274 -2.7316 12 1 6.6563 1.7824 -0.5109 13 6 1.6384 2.1174 1.2862 14 6 0.8371 3.2437 1.2548 15 6 0.4675 3.8635 2.4337 16 6 0.8983 3.3573 3.6457 17 6 1.7005 2.2296 3.6784 18 9 2.1217 1.7338 4.8624 19 6 2.0705 1.6099 2.4965 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 3.8333 0.3836 -3.1412 26 1 0.5035 3.6423 0.3081 27 1 -0.1580 4.7434 2.4079 28 1 0.6097 3.8420 4.5667 29 1 2.6967 0.7303 2.5210 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084333553.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = -57.207889 kcal Electronic energy + Delta-G solvation = -13353.248248 eV Core-core repulsion = 10961.324503 eV Total energy + Delta-G solvation = -2391.923745 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.80363 -40.12856 -36.60155 -33.80720 -31.58375 -31.21161 -28.75469 -25.32837 -23.81430 -23.03837 -21.15841 -18.44030 -18.17146 -16.98950 -16.84667 -16.53731 -16.48343 -15.25797 -14.83925 -14.68657 -14.27013 -13.96453 -13.29703 -13.27559 -13.04508 -12.77480 -12.61793 -12.42384 -12.22991 -11.90178 -11.57385 -11.07720 -11.04552 -10.44737 -9.68398 -9.40880 -8.14982 -6.23280 0.36697 0.50471 1.39696 1.41770 1.50111 2.41604 2.86041 3.15509 3.41259 4.01097 4.06300 4.32645 4.47035 4.57954 4.59313 4.63706 4.77265 5.06083 5.22294 5.22921 5.30043 5.34095 5.43715 5.50804 5.61691 5.69085 5.93979 6.04011 6.16613 6.35074 6.85088 7.42750 8.92445 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.031645 B = 0.010420 C = 0.009219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.609032 B = 2686.580758 C = 3036.337101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.102 4.102 3 C 0.078 3.922 4 H 0.018 0.982 5 C -0.529 4.529 6 H 0.048 0.952 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.272 1.272 13 C -0.023 4.023 14 C -0.148 4.148 15 C -0.081 4.081 16 C -0.171 4.171 17 C 0.078 3.922 18 F -0.152 7.152 19 C -0.164 4.164 20 H 0.044 0.956 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.035 0.965 25 H 0.263 0.737 26 H 0.128 0.872 27 H 0.165 0.835 28 H 0.158 0.842 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 3.728 8.005 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.140 4.140 3 C 0.059 3.941 4 H 0.037 0.963 5 C -0.566 4.566 6 H 0.066 0.934 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.197 1.197 13 C -0.023 4.023 14 C -0.166 4.166 15 C -0.098 4.098 16 C -0.189 4.189 17 C 0.059 3.941 18 F -0.131 7.131 19 C -0.183 4.183 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.146 0.854 27 H 0.183 0.817 28 H 0.175 0.825 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.806 3.646 7.864 10.433 hybrid contribution 1.347 -0.543 -0.227 1.470 sum -4.460 3.103 7.637 9.373 Atomic orbital electron populations 1.21716 0.96052 1.00869 1.00788 1.21408 0.94597 0.98275 0.99737 1.17801 0.94546 0.92436 0.89282 0.96347 1.21379 0.92074 1.42332 1.00859 0.93413 1.25621 1.01893 0.95286 0.95034 1.70055 1.37014 1.45509 1.02524 0.85757 0.81159 0.78718 0.77204 1.20049 1.20745 1.19704 1.20261 0.92559 0.94385 0.95092 1.21390 0.99500 0.96108 0.99611 1.21287 0.98442 0.99756 0.90334 1.21279 1.00660 0.96219 1.00772 1.17927 0.99796 0.96280 0.80095 1.91427 1.88948 1.87528 1.45165 1.20961 1.03501 1.02356 0.91505 0.93640 0.92709 0.93133 0.93539 0.94589 0.92830 0.85355 0.81710 0.82457 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 9.73 71.98 0.70 -4.48 15 2 C -0.10 -4.71 5.19 30.60 0.16 -4.55 15 3 C 0.08 3.81 1.82 -12.29 -0.02 3.78 15 4 H 0.02 0.98 7.82 -2.39 -0.02 0.97 15 5 C -0.53 -28.84 8.19 25.60 0.21 -28.63 15 6 H 0.05 2.63 7.55 -2.91 -0.02 2.61 15 7 C 0.02 1.17 5.16 84.66 0.44 1.60 15 8 N -0.91 -51.96 12.16 21.45 0.26 -51.70 15 9 Si 0.95 43.53 29.55 68.60 2.03 45.56 15 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 15 13 C -0.02 -0.95 3.72 -19.87 -0.07 -1.02 15 14 C -0.15 -5.14 9.67 22.27 0.22 -4.92 15 15 C -0.08 -2.20 10.04 22.26 0.22 -1.97 15 16 C -0.17 -4.83 10.03 22.31 0.22 -4.60 15 17 C 0.08 2.72 7.30 22.37 0.16 2.88 15 18 F -0.15 -5.22 17.27 44.97 0.78 -4.45 15 19 C -0.16 -6.62 8.58 22.31 0.19 -6.43 15 20 H 0.04 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 22 H 0.05 1.79 7.37 -2.39 -0.02 1.77 15 23 H 0.05 2.40 6.80 -2.38 -0.02 2.39 15 24 H 0.04 1.62 7.23 -2.39 -0.02 1.61 15 25 H 0.26 14.25 8.31 -92.71 -0.77 13.48 15 26 H 0.13 4.22 7.94 -2.91 -0.02 4.19 15 27 H 0.17 3.09 8.06 -2.91 -0.02 3.07 15 28 H 0.16 3.35 8.06 -2.91 -0.02 3.33 15 29 H 0.11 4.89 7.54 -2.91 -0.02 4.87 15 Total: -1.00 -59.04 252.69 6.62 -52.43 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.13 Total: 6.50 kcal Atomic # 6 Polarization: -50.76 SS G_CDS: 2.43 Total: -48.34 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.26 Total: -51.70 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.45 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -59.04 6.62 -52.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084333553.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.782 kcal (2) G-P(sol) polarization free energy of solvation -59.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds