Wall clock time and date at job start Mon Mar 30 2020 02:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46663 * 2 1 4 4 H 1.08993 * 109.47266 * 305.56738 * 3 2 1 5 5 C 1.50708 * 109.46806 * 65.56852 * 3 2 1 6 6 H 1.07996 * 119.99847 * 55.15494 * 5 3 2 7 7 C 1.37873 * 119.99696 * 235.14675 * 5 3 2 8 8 N 1.31516 * 119.99883 * 173.60085 * 7 5 3 9 9 Si 1.86798 * 120.00332 * 353.60066 * 7 5 3 10 10 H 1.48493 * 109.47102 * 85.74499 * 9 7 5 11 11 H 1.48500 * 109.47250 * 205.74823 * 9 7 5 12 12 H 1.48499 * 109.47036 * 325.74382 * 9 7 5 13 13 C 1.50696 * 109.46902 * 185.56756 * 3 2 1 14 14 C 1.38237 * 119.97709 * 120.00478 * 13 3 2 15 15 C 1.38202 * 120.03110 * 179.97438 * 14 13 3 16 16 C 1.38464 * 119.96906 * 0.02562 * 15 14 13 17 17 F 1.35101 * 120.02049 * 180.02562 * 16 15 14 18 18 C 1.38457 * 119.94856 * 359.97438 * 16 15 14 19 19 C 1.38193 * 119.97784 * 359.97438 * 18 16 15 20 20 H 1.08997 * 109.47768 * 61.01829 * 1 2 3 21 21 H 1.09002 * 109.46759 * 181.01687 * 1 2 3 22 22 H 1.08999 * 109.47131 * 301.01728 * 1 2 3 23 23 H 1.08993 * 109.46839 * 240.00631 * 2 1 3 24 24 H 1.08994 * 109.47494 * 120.00089 * 2 1 3 25 25 H 0.96999 * 120.00242 * 180.02562 * 8 7 5 26 26 H 1.08006 * 119.98456 * 0.27147 * 14 13 3 27 27 H 1.07998 * 120.01599 * 180.02562 * 15 14 13 28 28 H 1.08000 * 120.00896 * 179.97438 * 18 16 15 29 29 H 1.08006 * 119.99028 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5975 1.9843 -0.8359 5 6 1.6532 2.1120 1.2937 6 1 1.9362 1.6685 2.2368 7 6 0.9383 3.2907 1.2730 8 7 0.4923 3.8090 2.3965 9 14 0.6032 4.1517 -0.3505 10 1 -0.6209 3.5827 -0.9691 11 1 0.4070 5.6038 -0.1095 12 1 1.7574 3.9530 -1.2635 13 6 3.5406 1.4449 -0.1378 14 6 4.1344 2.0780 -1.2137 15 6 5.5105 2.0812 -1.3410 16 6 6.2945 1.4495 -0.3904 17 9 7.6399 1.4525 -0.5135 18 6 5.6987 0.8157 0.6867 19 6 4.3225 0.8147 0.8124 20 1 -0.3634 0.4979 -0.8989 21 1 -0.3633 -1.0275 0.0182 22 1 -0.3633 0.5295 0.8807 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 -0.0110 4.6381 2.3820 26 1 3.5228 2.5744 -1.9527 27 1 5.9742 2.5762 -2.1814 28 1 6.3092 0.3224 1.4285 29 1 3.8574 0.3201 1.6524 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084333555.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:12 Heat of formation + Delta-G solvation = -56.960035 kcal Electronic energy + Delta-G solvation = -13310.736344 eV Core-core repulsion = 10918.823346 eV Total energy + Delta-G solvation = -2391.912997 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.78113 -40.14081 -36.58834 -33.94388 -31.96550 -31.44480 -28.47983 -25.38533 -23.99995 -22.88127 -20.98544 -19.11059 -18.53871 -16.98093 -16.72423 -16.48073 -16.01296 -15.20736 -15.03688 -14.68349 -14.34121 -14.15548 -13.73173 -13.44498 -13.36685 -12.80569 -12.61149 -12.13197 -11.91822 -11.75426 -11.67732 -11.34172 -10.91914 -10.65063 -9.92478 -9.25308 -8.25152 -6.26047 0.37598 0.42010 1.35760 1.38401 1.46479 2.37033 2.79526 3.14312 3.40511 3.89022 4.05428 4.17114 4.36792 4.51382 4.56574 4.66868 4.73768 4.93439 5.12570 5.15018 5.25263 5.28908 5.35175 5.48540 5.55142 5.59260 5.76484 5.88684 6.10710 6.37655 6.78888 7.37409 8.91264 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.033226 B = 0.010674 C = 0.009702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.512977 B = 2622.597739 C = 2885.202225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C 0.040 3.960 4 H 0.044 0.956 5 C -0.489 4.489 6 H 0.038 0.962 7 C 0.016 3.984 8 N -0.948 5.948 9 Si 0.925 3.075 10 H -0.263 1.263 11 H -0.296 1.296 12 H -0.241 1.241 13 C -0.063 4.063 14 C -0.118 4.118 15 C -0.147 4.147 16 C 0.058 3.942 17 F -0.149 7.149 18 C -0.151 4.151 19 C -0.093 4.093 20 H 0.045 0.955 21 H 0.063 0.937 22 H 0.038 0.962 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.263 0.737 26 H 0.133 0.867 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.617 -5.455 -8.556 12.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.139 4.139 3 C 0.021 3.979 4 H 0.062 0.938 5 C -0.527 4.527 6 H 0.056 0.944 7 C -0.181 4.181 8 N -0.589 5.589 9 Si 0.750 3.250 10 H -0.188 1.188 11 H -0.223 1.223 12 H -0.164 1.164 13 C -0.064 4.064 14 C -0.136 4.136 15 C -0.166 4.166 16 C 0.039 3.961 17 F -0.128 7.128 18 C -0.170 4.170 19 C -0.111 4.111 20 H 0.064 0.936 21 H 0.082 0.918 22 H 0.057 0.943 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.170 0.830 28 H 0.166 0.834 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.569 -5.314 -8.484 11.973 hybrid contribution -0.155 0.836 -0.020 0.850 sum 6.413 -4.478 -8.504 11.554 Atomic orbital electron populations 1.21631 0.96160 1.00836 1.01015 1.21494 0.95918 0.96063 1.00415 1.18414 0.88154 0.95369 0.95950 0.93799 1.21033 1.32762 1.06841 0.92026 0.94370 1.25852 0.95200 0.97874 0.99194 1.70041 1.38646 1.21341 1.28823 0.86057 0.80255 0.77354 0.81318 1.18782 1.22293 1.16430 1.20696 0.98081 0.94441 0.93167 1.21131 0.94160 0.99844 0.98448 1.21246 0.93753 1.01545 1.00053 1.17723 0.76663 1.03470 0.98213 1.91436 1.29922 1.95338 1.96112 1.21269 0.95494 1.01931 0.98276 1.20893 0.92407 0.99160 0.98615 0.93615 0.91790 0.94320 0.92128 0.93096 0.92781 0.84910 0.83010 0.83443 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 9.75 71.98 0.70 -4.32 15 2 C -0.10 -3.73 5.12 30.60 0.16 -3.58 15 3 C 0.04 1.71 1.88 -12.28 -0.02 1.69 15 4 H 0.04 1.86 4.58 -2.39 -0.01 1.85 15 5 C -0.49 -25.88 7.47 25.60 0.19 -25.68 15 6 H 0.04 2.26 8.06 -2.91 -0.02 2.23 15 7 C 0.02 0.88 5.47 84.65 0.46 1.34 15 8 N -0.95 -57.53 13.96 21.45 0.30 -57.23 15 9 Si 0.93 42.13 26.93 68.60 1.85 43.98 15 10 H -0.26 -11.40 7.11 99.48 0.71 -10.69 15 11 H -0.30 -13.73 7.11 99.48 0.71 -13.02 15 12 H -0.24 -9.92 6.61 99.48 0.66 -9.27 15 13 C -0.06 -2.47 4.77 -19.86 -0.09 -2.57 15 14 C -0.12 -4.09 9.67 22.26 0.22 -3.87 15 15 C -0.15 -4.55 10.03 22.32 0.22 -4.33 15 16 C 0.06 1.86 7.30 22.38 0.16 2.03 15 17 F -0.15 -4.58 17.27 44.97 0.78 -3.80 15 18 C -0.15 -4.87 10.03 22.31 0.22 -4.65 15 19 C -0.09 -3.40 8.87 22.26 0.20 -3.20 15 20 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 21 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.04 1.63 7.37 -2.39 -0.02 1.61 15 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.05 1.89 7.59 -2.39 -0.02 1.87 15 25 H 0.26 15.13 8.31 -92.71 -0.77 14.36 15 26 H 0.13 4.26 7.73 -2.91 -0.02 4.24 15 27 H 0.15 3.75 8.06 -2.91 -0.02 3.73 15 28 H 0.15 3.96 8.06 -2.91 -0.02 3.94 15 29 H 0.12 4.60 7.64 -2.91 -0.02 4.57 15 Total: -1.00 -59.85 251.15 6.42 -53.42 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.08 Total: 10.77 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 2.42 Total: -47.13 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.30 Total: -57.23 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.78 Total: -3.80 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.85 Total: 43.98 kcal Total: -59.85 6.42 -53.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084333555.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.537 kcal (2) G-P(sol) polarization free energy of solvation -59.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds