Wall clock time and date at job start Mon Mar 30 2020 02:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47355 * 2 1 4 4 H 1.09004 * 109.46966 * 305.57154 * 3 2 1 5 5 C 1.50702 * 109.47246 * 65.57036 * 3 2 1 6 6 H 1.08005 * 119.99615 * 59.59886 * 5 3 2 7 7 C 1.37874 * 119.99919 * 239.87023 * 5 3 2 8 8 N 1.31516 * 119.99510 * 173.35832 * 7 5 3 9 9 Si 1.86795 * 120.00284 * 353.36197 * 7 5 3 10 10 H 1.48501 * 109.47442 * 85.51069 * 9 7 5 11 11 H 1.48500 * 109.47235 * 205.51324 * 9 7 5 12 12 H 1.48502 * 109.47280 * 325.51543 * 9 7 5 13 13 C 1.50695 * 109.47125 * 185.57311 * 3 2 1 14 14 C 1.38223 * 120.01391 * 299.99676 * 13 3 2 15 15 C 1.38223 * 120.02882 * 179.97438 * 14 13 3 16 16 C 1.38272 * 120.04872 * 0.02562 * 15 14 13 17 17 C 1.38181 * 120.02628 * 0.02562 * 16 15 14 18 18 C 1.38441 * 120.01601 * 119.72463 * 13 3 2 19 19 F 1.35102 * 120.02355 * 359.97438 * 18 13 3 20 20 H 1.08999 * 109.47341 * 174.78604 * 1 2 3 21 21 H 1.08998 * 109.46729 * 294.78432 * 1 2 3 22 22 H 1.08994 * 109.46872 * 54.77992 * 1 2 3 23 23 H 1.09005 * 109.47045 * 240.00032 * 2 1 3 24 24 H 1.09004 * 109.46844 * 120.00113 * 2 1 3 25 25 H 0.97002 * 119.99306 * 180.02562 * 8 7 5 26 26 H 1.08000 * 119.98447 * 359.95601 * 14 13 3 27 27 H 1.07995 * 119.97566 * 180.02562 * 15 14 13 28 28 H 1.08002 * 119.98534 * 179.97438 * 16 15 14 29 29 H 1.07996 * 120.01083 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5976 1.9843 -0.8359 5 6 1.6535 2.1120 1.2936 6 1 1.9973 1.7080 2.2344 7 6 0.8566 3.2369 1.2763 8 7 0.4116 3.7448 2.4049 9 14 0.4087 4.0394 -0.3499 10 1 -0.7882 3.3698 -0.9194 11 1 0.1124 5.4774 -0.1273 12 1 1.5458 3.9090 -1.2960 13 6 3.5407 1.4446 -0.1380 14 6 4.3232 0.8140 0.8110 15 6 5.6996 0.8154 0.6845 16 6 6.2954 1.4479 -0.3911 17 6 5.5153 2.0799 -1.3405 18 6 4.1359 2.0734 -1.2182 19 9 3.3718 2.6850 -2.1496 20 1 -0.3634 -1.0234 -0.0934 21 1 -0.3633 0.4308 0.9330 22 1 -0.3633 0.5926 -0.8395 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 -0.1494 4.5361 2.3927 26 1 3.8589 0.3203 1.6519 27 1 6.3101 0.3220 1.4262 28 1 7.3710 1.4487 -0.4887 29 1 5.9809 2.5742 -2.1802 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084333560.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:15 Heat of formation + Delta-G solvation = -56.467215 kcal Electronic energy + Delta-G solvation = -13632.876911 eV Core-core repulsion = 11240.985284 eV Total energy + Delta-G solvation = -2391.891627 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.76083 -39.96440 -36.80612 -34.01396 -31.83040 -31.23668 -28.69936 -25.53505 -23.82730 -22.83206 -20.99982 -19.21716 -18.37369 -17.05323 -16.76060 -16.52052 -16.08844 -15.12927 -14.97608 -14.79603 -14.59355 -13.97315 -13.72268 -13.43623 -12.97555 -12.78605 -12.65393 -12.31569 -12.16771 -11.77828 -11.59105 -11.38542 -10.99095 -10.69808 -9.67657 -9.33841 -8.31390 -6.30923 0.38767 0.51811 1.27657 1.32808 1.45692 2.31945 2.84341 3.08052 3.53788 3.95408 4.05520 4.26083 4.37807 4.48319 4.56865 4.64868 4.69232 4.92276 5.07338 5.20554 5.28583 5.31838 5.39080 5.48472 5.51951 5.60668 5.72555 5.76924 6.16648 6.31015 6.73004 7.32852 8.84580 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.029719 B = 0.013415 C = 0.012297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.934384 B = 2086.644618 C = 2276.394239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 C 0.034 3.966 4 H 0.036 0.964 5 C -0.485 4.485 6 H 0.045 0.955 7 C 0.024 3.976 8 N -0.943 5.943 9 Si 0.911 3.089 10 H -0.265 1.265 11 H -0.292 1.292 12 H -0.246 1.246 13 C -0.096 4.096 14 C -0.100 4.100 15 C -0.124 4.124 16 C -0.106 4.106 17 C -0.155 4.155 18 C 0.044 3.956 19 F -0.159 7.159 20 H 0.069 0.931 21 H 0.040 0.960 22 H 0.035 0.965 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.264 0.736 26 H 0.122 0.878 27 H 0.155 0.845 28 H 0.167 0.833 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.576 -6.316 -7.167 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.137 4.137 3 C 0.015 3.985 4 H 0.054 0.946 5 C -0.522 4.522 6 H 0.063 0.937 7 C -0.174 4.174 8 N -0.584 5.584 9 Si 0.737 3.263 10 H -0.190 1.190 11 H -0.219 1.219 12 H -0.170 1.170 13 C -0.097 4.097 14 C -0.118 4.118 15 C -0.142 4.142 16 C -0.124 4.124 17 C -0.173 4.173 18 C 0.025 3.975 19 F -0.138 7.138 20 H 0.088 0.912 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.140 0.860 27 H 0.173 0.827 28 H 0.184 0.816 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.430 -6.151 -7.130 13.326 hybrid contribution -0.922 1.036 -0.451 1.458 sum 8.508 -5.115 -7.581 12.491 Atomic orbital electron populations 1.21612 0.96136 1.00842 1.00814 1.21486 0.95949 0.95881 1.00347 1.18387 0.88311 0.95617 0.96157 0.94596 1.20982 1.28997 1.10314 0.91947 0.93656 1.25695 0.95661 0.97478 0.98548 1.70013 1.36435 1.23928 1.27980 0.86280 0.80168 0.77685 0.82211 1.19021 1.21876 1.17002 1.20636 0.98693 0.96980 0.93420 1.20986 0.94261 0.98898 0.97623 1.21545 0.93833 0.99804 0.99019 1.21287 1.01172 0.96754 0.93202 1.21355 0.90426 1.02985 1.02564 1.18102 0.90120 0.99998 0.89286 1.91404 1.76454 1.81513 1.64437 0.91235 0.94103 0.94553 0.92746 0.92390 0.92687 0.85984 0.82686 0.81593 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 9.65 71.98 0.69 -4.66 15 2 C -0.10 -3.97 5.12 30.59 0.16 -3.81 15 3 C 0.03 1.61 1.90 -12.29 -0.02 1.59 15 4 H 0.04 1.77 3.73 -2.38 -0.01 1.76 15 5 C -0.48 -26.95 7.58 25.60 0.19 -26.76 15 6 H 0.05 2.74 8.03 -2.91 -0.02 2.72 15 7 C 0.02 1.38 5.47 84.65 0.46 1.85 15 8 N -0.94 -58.81 13.96 21.45 0.30 -58.51 15 9 Si 0.91 45.79 26.99 68.60 1.85 47.64 15 10 H -0.27 -12.76 7.11 99.48 0.71 -12.05 15 11 H -0.29 -14.61 7.11 99.48 0.71 -13.90 15 12 H -0.25 -12.14 5.44 99.48 0.54 -11.59 15 13 C -0.10 -4.07 4.78 -19.82 -0.09 -4.16 15 14 C -0.10 -3.63 8.87 22.26 0.20 -3.43 15 15 C -0.12 -3.46 10.04 22.27 0.22 -3.23 15 16 C -0.11 -2.70 10.04 22.26 0.22 -2.47 15 17 C -0.15 -4.73 10.03 22.31 0.22 -4.51 15 18 C 0.04 1.75 7.25 22.38 0.16 1.91 15 19 F -0.16 -6.88 14.93 44.97 0.67 -6.21 15 20 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 21 H 0.04 1.81 7.57 -2.39 -0.02 1.79 15 22 H 0.04 1.41 8.14 -2.39 -0.02 1.40 15 23 H 0.05 1.94 8.14 -2.38 -0.02 1.92 15 24 H 0.06 2.26 7.59 -2.38 -0.02 2.24 15 25 H 0.26 15.60 8.31 -92.71 -0.77 14.83 15 26 H 0.12 4.48 7.62 -2.91 -0.02 4.46 15 27 H 0.16 3.17 8.06 -2.91 -0.02 3.14 15 28 H 0.17 2.73 8.06 -2.91 -0.02 2.71 15 29 H 0.15 3.68 8.06 -2.91 -0.02 3.66 15 Total: -1.00 -65.71 247.71 6.21 -59.51 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 0.97 Total: 5.26 kcal Atomic # 6 Polarization: -50.11 SS G_CDS: 2.42 Total: -47.69 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 0.30 Total: -58.51 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.67 Total: -6.21 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.85 Total: 47.64 kcal Total: -65.71 6.21 -59.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084333560.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.039 kcal (2) G-P(sol) polarization free energy of solvation -65.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds