Wall clock time and date at job start Mon Mar 30 2020 02:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46894 * 60.00253 * 9 7 5 11 11 H 1.48500 * 109.47102 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47542 * 300.00050 * 9 7 5 13 13 C 1.50705 * 109.47390 * 64.99953 * 3 2 1 14 14 C 1.38219 * 120.00917 * 59.72486 * 13 3 2 15 15 C 1.38223 * 120.02427 * 179.72356 * 14 13 3 16 16 C 1.38263 * 120.05129 * 0.55583 * 15 14 13 17 17 C 1.38175 * 120.02436 * 359.72242 * 16 15 14 18 18 C 1.38436 * 120.01752 * 240.00638 * 13 3 2 19 19 F 1.35102 * 120.02082 * 0.02562 * 18 13 3 20 20 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 21 21 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 25 25 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 26 26 H 1.08004 * 119.98631 * 0.02562 * 14 13 3 27 27 H 1.08009 * 119.97251 * 180.27799 * 15 14 13 28 28 H 1.08003 * 119.98884 * 179.74452 * 16 15 14 29 29 H 1.08005 * 120.01178 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2351 11 1 6.3977 0.2169 -2.6505 12 1 6.4994 2.2817 -1.3823 13 6 1.6413 2.1163 1.2877 14 6 2.0719 1.6051 2.4976 15 6 1.7111 2.2262 3.6785 16 6 0.9098 3.3526 3.6517 17 6 0.4735 3.8621 2.4437 18 6 0.8389 3.2441 1.2597 19 9 0.4124 3.7410 0.0780 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.8292 -0.0602 -2.9503 26 1 2.6945 0.7229 2.5199 27 1 2.0518 1.8286 4.6232 28 1 0.6252 3.8347 4.5753 29 1 -0.1521 4.7423 2.4230 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084333561.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:17 Heat of formation + Delta-G solvation = -40.381493 kcal Electronic energy + Delta-G solvation = -13570.611237 eV Core-core repulsion = 11179.417139 eV Total energy + Delta-G solvation = -2391.194098 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.10868 -38.51388 -34.95759 -31.78855 -30.05622 -29.70760 -26.85168 -23.46241 -22.31192 -21.46685 -19.28436 -16.92401 -16.42690 -15.55317 -15.13914 -14.80584 -14.45728 -13.52380 -13.35093 -12.90887 -12.43827 -12.34561 -11.85790 -11.62627 -11.24461 -11.02015 -10.92595 -10.72589 -10.50173 -9.99941 -9.69749 -9.37391 -9.06743 -8.35850 -8.25826 -7.80148 -6.02323 -4.09954 1.80996 1.93039 3.30672 3.35370 3.38161 4.26163 4.43848 4.97848 5.26740 5.33674 5.44228 5.67491 5.91192 6.05682 6.24918 6.28220 6.51033 6.53876 6.65138 6.78400 6.95139 6.95954 7.08373 7.20107 7.34811 7.59772 7.71436 7.93949 8.06718 8.35913 8.91972 9.54181 11.02882 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032970 B = 0.011172 C = 0.010260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.064254 B = 2505.644484 C = 2728.432114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C 0.075 3.925 4 H 0.042 0.958 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C -0.059 4.059 14 C -0.088 4.088 15 C -0.137 4.137 16 C -0.123 4.123 17 C -0.162 4.162 18 C 0.082 3.918 19 F -0.142 7.142 20 H 0.034 0.966 21 H 0.044 0.956 22 H 0.034 0.966 23 H 0.035 0.965 24 H 0.098 0.902 25 H 0.262 0.738 26 H 0.130 0.870 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 2.318 8.113 9.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C 0.057 3.943 4 H 0.060 0.940 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C -0.060 4.060 14 C -0.106 4.106 15 C -0.156 4.156 16 C -0.141 4.141 17 C -0.180 4.180 18 C 0.062 3.938 19 F -0.121 7.121 20 H 0.053 0.947 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.131 2.243 7.878 9.174 hybrid contribution 0.912 0.164 -0.307 0.976 sum -3.219 2.407 7.571 8.572 Atomic orbital electron populations 1.21851 0.99280 0.99242 1.00124 1.21604 0.91616 0.99102 1.02624 1.17911 0.96138 0.92140 0.88140 0.94038 1.21053 0.90256 1.37897 1.05606 0.92468 1.24953 0.98173 0.95148 0.95568 1.69866 1.34976 1.38325 1.09405 0.86623 0.85564 0.78303 0.77343 1.20203 1.21228 1.20256 1.20766 0.93070 0.93173 0.98994 1.20988 0.98737 1.00021 0.90819 1.21129 0.99598 0.96681 0.98159 1.20717 0.99568 0.97265 0.96593 1.20974 1.03713 1.01552 0.91809 1.17721 0.99582 0.95776 0.80679 1.91438 1.88238 1.86883 1.45534 0.94679 0.93653 0.94651 0.94628 0.88396 0.92795 0.85177 0.86481 0.86334 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.73 37.16 0.36 -2.67 15 2 C -0.11 -2.63 5.13 -26.73 -0.14 -2.77 15 3 C 0.08 1.89 1.94 -92.92 -0.18 1.71 15 4 H 0.04 1.16 7.13 -51.93 -0.37 0.79 15 5 C -0.51 -13.86 8.25 -34.44 -0.28 -14.15 15 6 H 0.06 1.54 7.61 -52.48 -0.40 1.14 15 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 15 8 N -0.89 -25.08 11.29 55.43 0.63 -24.45 15 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 15 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 13 C -0.06 -1.30 3.72 -104.55 -0.39 -1.69 15 14 C -0.09 -1.69 8.66 -39.59 -0.34 -2.03 15 15 C -0.14 -2.20 10.04 -39.58 -0.40 -2.60 15 16 C -0.12 -1.87 10.04 -39.60 -0.40 -2.27 15 17 C -0.16 -2.74 10.03 -39.52 -0.40 -3.14 15 18 C 0.08 1.68 7.25 -39.42 -0.29 1.40 15 19 F -0.14 -3.11 16.19 2.25 0.04 -3.07 15 20 H 0.03 0.68 7.38 -51.93 -0.38 0.30 15 21 H 0.04 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.03 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.03 0.80 7.21 -51.93 -0.37 0.42 15 24 H 0.10 2.57 5.95 -51.93 -0.31 2.26 15 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 26 H 0.13 2.49 7.53 -52.48 -0.40 2.10 15 27 H 0.12 1.52 8.06 -52.48 -0.42 1.09 15 28 H 0.12 1.40 8.06 -52.48 -0.42 0.98 15 29 H 0.12 1.75 8.06 -52.48 -0.42 1.33 15 LS Contribution 250.01 15.07 3.77 3.77 Total: -1.00 -28.19 250.01 -6.61 -34.80 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -3.48 Total: -0.58 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -2.54 Total: -26.57 kcal Atomic # 7 Polarization: -25.08 SS G_CDS: 0.63 Total: -24.45 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.19 -6.61 -34.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084333561.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.582 kcal (2) G-P(sol) polarization free energy of solvation -28.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds