Wall clock time and date at job start Mon Mar 30 2020 02:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38220 * 120.01674 * 2 1 4 4 C 1.38223 * 120.02755 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.97283 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47465 * 359.97438 * 5 4 3 7 7 C 1.52999 * 109.47215 * 239.97568 * 5 4 3 8 8 C 1.50701 * 109.47068 * 119.97934 * 5 4 3 9 9 H 1.07995 * 120.00147 * 359.97438 * 8 5 4 10 10 C 1.37878 * 119.99933 * 179.97438 * 8 5 4 11 11 N 1.31515 * 120.00298 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99914 * 179.97438 * 10 8 5 13 13 H 1.48496 * 109.47355 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47285 * 120.00469 * 12 10 8 15 15 H 1.48505 * 109.47493 * 240.00102 * 12 10 8 16 16 C 1.38265 * 120.04931 * 359.97438 * 4 3 2 17 17 C 1.38168 * 120.02977 * 359.97438 * 16 4 3 18 18 C 1.38440 * 120.01195 * 180.02562 * 2 1 3 19 19 F 1.35102 * 120.02757 * 0.24616 * 18 2 1 20 20 H 1.09001 * 109.46710 * 269.99878 * 1 2 3 21 21 H 1.09004 * 109.46977 * 29.99518 * 1 2 3 22 22 H 1.08998 * 109.47601 * 150.00108 * 1 2 3 23 23 H 1.08000 * 119.98716 * 0.02562 * 3 2 1 24 24 H 1.09004 * 109.47313 * 300.00110 * 7 5 4 25 25 H 1.09000 * 109.47090 * 60.00289 * 7 5 4 26 26 H 1.08999 * 109.47628 * 179.97438 * 7 5 4 27 27 H 0.96997 * 120.00101 * 179.97438 * 11 10 8 28 28 H 1.08002 * 119.98423 * 179.97438 * 16 4 3 29 29 H 1.08007 * 120.01590 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3332 2.5026 0.0000 6 1 3.6244 3.3307 0.0004 7 6 5.2128 2.5849 -1.2492 8 6 5.1997 2.5824 1.2305 9 1 5.2045 1.7693 1.9412 10 6 5.9862 3.6936 1.4489 11 7 5.9800 4.6841 0.5837 12 14 7.0597 3.7928 2.9744 13 1 6.8859 2.5595 3.7831 14 1 8.4827 3.9243 2.5708 15 1 6.6633 4.9739 3.7827 16 6 4.2732 0.0004 -0.0005 17 6 3.5842 -1.1973 0.0005 18 6 2.1994 -1.1988 -0.0005 19 9 1.5247 -2.3693 -0.0061 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8901 -0.5138 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6585 2.1322 0.0004 24 1 5.9217 1.7568 -1.2496 25 1 4.5861 2.5272 -2.1392 26 1 5.7568 3.5294 -1.2490 27 1 6.5331 5.4659 0.7376 28 1 5.3532 0.0018 -0.0014 29 1 4.1255 -2.1319 0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084333563.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:38 Heat of formation + Delta-G solvation = -43.474237 kcal Electronic energy + Delta-G solvation = -13185.149173 eV Core-core repulsion = 10793.820964 eV Total energy + Delta-G solvation = -2391.328209 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.42487 -38.72061 -34.50201 -32.29040 -31.17854 -28.29395 -26.36687 -25.16662 -22.37002 -21.84903 -19.26588 -17.01083 -16.43788 -15.63583 -15.21695 -14.99107 -14.12955 -13.45099 -13.12991 -13.03066 -12.75561 -12.56619 -11.99022 -11.80236 -11.59535 -11.25287 -10.95178 -10.66719 -10.54081 -10.27141 -10.08747 -9.51021 -9.03651 -8.42540 -8.32180 -7.69272 -6.05729 -4.12864 1.81149 1.85119 3.26349 3.34881 3.39258 4.23080 4.42358 4.79446 5.16037 5.22099 5.26281 5.55014 5.79302 5.91021 5.91772 6.06666 6.11000 6.47594 6.68620 6.74217 6.80170 6.90197 7.07735 7.14400 7.26079 7.57771 7.67902 7.89931 8.04496 8.33463 8.90036 9.52302 10.99885 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.045977 B = 0.008195 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.848191 B = 3415.900204 C = 3534.833558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.035 4.035 5 C 0.070 3.930 6 H 0.036 0.964 7 C -0.133 4.133 8 C -0.509 4.509 9 H 0.058 0.942 10 C 0.062 3.938 11 N -0.889 5.889 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.090 4.090 17 C -0.154 4.154 18 C 0.059 3.941 19 F -0.153 7.153 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.125 0.875 24 H 0.029 0.971 25 H 0.009 0.991 26 H 0.086 0.914 27 H 0.261 0.739 28 H 0.131 0.869 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 -7.222 -1.736 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.125 4.125 3 C -0.124 4.124 4 C -0.035 4.035 5 C 0.052 3.948 6 H 0.054 0.946 7 C -0.190 4.190 8 C -0.547 4.547 9 H 0.077 0.923 10 C -0.139 4.139 11 N -0.528 5.528 12 Si 0.721 3.279 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.108 4.108 17 C -0.173 4.173 18 C 0.040 3.960 19 F -0.132 7.132 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.143 0.857 24 H 0.048 0.952 25 H 0.028 0.972 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.149 0.851 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.919 -7.090 -1.765 9.403 hybrid contribution 0.560 -0.118 0.872 1.043 sum -5.360 -7.208 -0.893 9.027 Atomic orbital electron populations 1.20647 0.91123 1.02517 1.02174 1.19814 0.96246 0.92206 1.04249 1.20922 0.94165 0.96345 1.00961 1.20768 0.93025 0.97689 0.92057 1.17917 0.93919 0.87903 0.95074 0.94564 1.21796 0.99105 1.03056 0.95076 1.21148 1.24316 1.03466 1.05754 0.92341 1.24959 0.96842 0.95568 0.96540 1.69890 1.40267 1.07351 1.35272 0.86518 0.80227 0.78090 0.83107 1.19723 1.20977 1.20989 1.20960 1.00572 0.90715 0.98521 1.21063 0.92038 0.99512 1.04662 1.17411 0.90060 0.80462 1.08023 1.91393 1.80646 1.46522 1.94597 0.91421 0.91362 0.91893 0.85721 0.95208 0.97178 0.89529 0.92941 0.85079 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.84 36.00 0.35 -1.12 15 2 C -0.12 -2.14 5.89 -104.56 -0.62 -2.76 15 3 C -0.11 -2.00 9.32 -39.59 -0.37 -2.37 15 4 C -0.04 -0.74 4.74 -104.62 -0.50 -1.24 15 5 C 0.07 1.70 2.48 -92.93 -0.23 1.47 15 6 H 0.04 0.94 7.87 -51.93 -0.41 0.53 15 7 C -0.13 -3.10 8.78 37.16 0.33 -2.78 15 8 C -0.51 -13.50 8.24 -34.44 -0.28 -13.78 15 9 H 0.06 1.56 7.60 -52.49 -0.40 1.16 15 10 C 0.06 1.67 5.30 -17.82 -0.09 1.58 15 11 N -0.89 -24.66 11.32 55.43 0.63 -24.04 15 12 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 15 13 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 16 C -0.09 -1.75 8.71 -39.60 -0.34 -2.10 15 17 C -0.15 -2.70 10.03 -39.52 -0.40 -3.10 15 18 C 0.06 1.05 7.24 -39.42 -0.29 0.76 15 19 F -0.15 -2.58 16.48 2.25 0.04 -2.54 15 20 H 0.07 0.86 8.14 -51.93 -0.42 0.43 15 21 H 0.07 0.83 8.09 -51.93 -0.42 0.41 15 22 H 0.06 0.81 7.64 -51.93 -0.40 0.41 15 23 H 0.12 2.19 7.94 -52.49 -0.42 1.77 15 24 H 0.03 0.66 7.39 -51.93 -0.38 0.27 15 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 15 26 H 0.09 2.23 6.07 -51.93 -0.32 1.91 15 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 28 H 0.13 2.53 7.57 -52.49 -0.40 2.13 15 29 H 0.12 1.85 8.06 -52.48 -0.42 1.43 15 LS Contribution 252.04 15.07 3.80 3.80 Total: -1.00 -27.37 252.04 -6.53 -33.90 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -3.54 Total: -1.52 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -2.43 Total: -25.42 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 0.63 Total: -24.04 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.37 -6.53 -33.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084333563.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.571 kcal (2) G-P(sol) polarization free energy of solvation -27.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds