Wall clock time and date at job start Mon Mar 30 2020 02:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38220 * 120.01674 * 2 1 4 4 C 1.38223 * 120.02755 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.97283 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47465 * 359.97438 * 5 4 3 7 7 C 1.52999 * 109.47215 * 239.97568 * 5 4 3 8 8 C 1.50701 * 109.47068 * 119.97934 * 5 4 3 9 9 H 1.07995 * 120.00147 * 359.97438 * 8 5 4 10 10 C 1.37878 * 119.99933 * 179.97438 * 8 5 4 11 11 N 1.31515 * 120.00298 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99914 * 179.97438 * 10 8 5 13 13 H 1.48496 * 109.47355 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47285 * 120.00469 * 12 10 8 15 15 H 1.48505 * 109.47493 * 240.00102 * 12 10 8 16 16 C 1.38265 * 120.04931 * 359.97438 * 4 3 2 17 17 C 1.38168 * 120.02977 * 359.97438 * 16 4 3 18 18 C 1.38440 * 120.01195 * 180.02562 * 2 1 3 19 19 F 1.35102 * 120.02757 * 0.24616 * 18 2 1 20 20 H 1.09001 * 109.46710 * 269.99878 * 1 2 3 21 21 H 1.09004 * 109.46977 * 29.99518 * 1 2 3 22 22 H 1.08998 * 109.47601 * 150.00108 * 1 2 3 23 23 H 1.08000 * 119.98716 * 0.02562 * 3 2 1 24 24 H 1.09004 * 109.47313 * 300.00110 * 7 5 4 25 25 H 1.09000 * 109.47090 * 60.00289 * 7 5 4 26 26 H 1.08999 * 109.47628 * 179.97438 * 7 5 4 27 27 H 0.96997 * 120.00101 * 179.97438 * 11 10 8 28 28 H 1.08002 * 119.98423 * 179.97438 * 16 4 3 29 29 H 1.08007 * 120.01590 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3332 2.5026 0.0000 6 1 3.6244 3.3307 0.0004 7 6 5.2128 2.5849 -1.2492 8 6 5.1997 2.5824 1.2305 9 1 5.2045 1.7693 1.9412 10 6 5.9862 3.6936 1.4489 11 7 5.9800 4.6841 0.5837 12 14 7.0597 3.7928 2.9744 13 1 6.8859 2.5595 3.7831 14 1 8.4827 3.9243 2.5708 15 1 6.6633 4.9739 3.7827 16 6 4.2732 0.0004 -0.0005 17 6 3.5842 -1.1973 0.0005 18 6 2.1994 -1.1988 -0.0005 19 9 1.5247 -2.3693 -0.0061 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8901 -0.5138 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6585 2.1322 0.0004 24 1 5.9217 1.7568 -1.2496 25 1 4.5861 2.5272 -2.1392 26 1 5.7568 3.5294 -1.2490 27 1 6.5331 5.4659 0.7376 28 1 5.3532 0.0018 -0.0014 29 1 4.1255 -2.1319 0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084333563.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:38 Heat of formation + Delta-G solvation = -56.457108 kcal Electronic energy + Delta-G solvation = -13185.712153 eV Core-core repulsion = 10793.820964 eV Total energy + Delta-G solvation = -2391.891189 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.78626 -40.20677 -36.30852 -33.81672 -32.89219 -29.91113 -27.67192 -27.19674 -24.03526 -23.29785 -20.92020 -18.44862 -18.29525 -17.17805 -16.83389 -16.56983 -15.73275 -14.96193 -14.75342 -14.38409 -14.13682 -14.00025 -13.54605 -13.44019 -13.08392 -12.97951 -12.81455 -12.38263 -12.17213 -12.11992 -11.74632 -11.30967 -10.97465 -10.46975 -9.73057 -9.21278 -8.09507 -6.23369 0.36779 0.39988 1.41305 1.44328 1.54955 2.43079 2.79548 3.18671 3.39541 3.86771 3.93261 4.18671 4.46193 4.51524 4.73192 4.77710 4.80899 4.96018 5.06394 5.15666 5.27179 5.30076 5.37119 5.48498 5.54000 5.68433 6.02231 6.05654 6.16004 6.35897 6.85339 7.44806 8.95026 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.045977 B = 0.008195 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.848191 B = 3415.900204 C = 3534.833558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.119 4.119 3 C -0.114 4.114 4 C -0.059 4.059 5 C 0.071 3.929 6 H 0.009 0.991 7 C -0.123 4.123 8 C -0.521 4.521 9 H 0.052 0.948 10 C 0.016 3.984 11 N -0.916 5.916 12 Si 0.953 3.047 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.282 1.282 16 C -0.101 4.101 17 C -0.147 4.147 18 C 0.057 3.943 19 F -0.145 7.145 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.131 0.869 24 H 0.034 0.966 25 H 0.025 0.975 26 H 0.060 0.940 27 H 0.262 0.738 28 H 0.127 0.873 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.680 -8.547 -1.337 10.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.120 4.120 3 C -0.132 4.132 4 C -0.060 4.060 5 C 0.052 3.948 6 H 0.028 0.972 7 C -0.181 4.181 8 C -0.559 4.559 9 H 0.070 0.930 10 C -0.183 4.183 11 N -0.555 5.555 12 Si 0.779 3.221 13 H -0.194 1.194 14 H -0.205 1.205 15 H -0.207 1.207 16 C -0.119 4.119 17 C -0.165 4.165 18 C 0.038 3.962 19 F -0.124 7.124 20 H 0.099 0.901 21 H 0.102 0.898 22 H 0.092 0.908 23 H 0.149 0.851 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.636 -8.424 -1.369 10.811 hybrid contribution 0.712 0.242 0.724 1.044 sum -5.924 -8.182 -0.644 10.122 Atomic orbital electron populations 1.20744 0.88394 1.03877 1.03397 1.20133 0.98234 0.91282 1.02372 1.21001 0.93434 0.97528 1.01206 1.20563 0.93997 0.96692 0.94717 1.17767 0.93438 0.88972 0.94595 0.97244 1.21642 0.99092 1.01689 0.95655 1.21411 1.24720 1.03275 1.06518 0.92977 1.25684 0.98098 0.95349 0.99165 1.70009 1.41012 1.07785 1.36736 0.85574 0.78638 0.78008 0.79862 1.19365 1.20498 1.20742 1.20920 1.00482 0.90998 0.99478 1.21261 0.92281 0.99781 1.03208 1.17546 0.90253 0.80879 1.07564 1.91415 1.80456 1.46060 1.94481 0.90124 0.89840 0.90782 0.85091 0.94731 0.95562 0.92143 0.92893 0.85515 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 9.84 71.23 0.70 -1.90 15 2 C -0.12 -3.84 5.89 -19.82 -0.12 -3.96 15 3 C -0.11 -4.19 9.32 22.26 0.21 -3.98 15 4 C -0.06 -2.50 4.74 -19.86 -0.09 -2.60 15 5 C 0.07 3.49 2.48 -12.29 -0.03 3.46 15 6 H 0.01 0.50 7.87 -2.39 -0.02 0.49 15 7 C -0.12 -5.84 8.78 71.98 0.63 -5.21 15 8 C -0.52 -28.01 8.24 25.60 0.21 -27.80 15 9 H 0.05 2.80 7.60 -2.91 -0.02 2.78 15 10 C 0.02 0.86 5.30 84.65 0.45 1.30 15 11 N -0.92 -51.65 11.32 21.45 0.24 -51.41 15 12 Si 0.95 42.87 29.54 68.60 2.03 44.90 15 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 14 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 16 C -0.10 -3.85 8.71 22.26 0.19 -3.66 15 17 C -0.15 -4.83 10.03 22.31 0.22 -4.60 15 18 C 0.06 1.85 7.24 22.38 0.16 2.01 15 19 F -0.15 -4.44 16.48 44.97 0.74 -3.70 15 20 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 21 H 0.08 1.77 8.09 -2.38 -0.02 1.75 15 22 H 0.07 1.64 7.64 -2.39 -0.02 1.62 15 23 H 0.13 4.54 7.94 -2.91 -0.02 4.52 15 24 H 0.03 1.55 7.39 -2.38 -0.02 1.53 15 25 H 0.03 1.10 8.14 -2.39 -0.02 1.08 15 26 H 0.06 3.18 6.07 -2.39 -0.01 3.16 15 27 H 0.26 14.02 8.31 -92.71 -0.77 13.25 15 28 H 0.13 4.86 7.57 -2.91 -0.02 4.84 15 29 H 0.15 4.05 8.06 -2.91 -0.02 4.03 15 Total: -1.00 -57.51 252.04 6.68 -50.82 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.13 Total: 6.31 kcal Atomic # 6 Polarization: -49.46 SS G_CDS: 2.54 Total: -46.93 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.24 Total: -51.41 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.74 Total: -3.70 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -57.51 6.68 -50.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084333563.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.633 kcal (2) G-P(sol) polarization free energy of solvation -57.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds