Wall clock time and date at job start Mon Mar 30 2020 02:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47141 * 2 1 4 4 O 1.42900 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.35551 * 116.99890 * 180.02562 * 4 3 2 6 6 C 1.39203 * 120.44397 * 180.02562 * 5 4 3 7 7 C 1.40594 * 118.09283 * 179.97438 * 6 5 4 8 8 C 1.41598 * 120.63126 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99953 * 353.78776 * 8 7 6 10 10 C 1.40080 * 119.99979 * 173.79436 * 8 7 6 11 11 N 1.30693 * 119.99864 * 6.22626 * 10 8 7 12 12 Si 1.86800 * 120.00019 * 186.22946 * 10 8 7 13 13 H 1.48504 * 109.47177 * 94.98159 * 12 10 8 14 14 H 1.48499 * 109.47070 * 214.98407 * 12 10 8 15 15 H 1.48501 * 109.46850 * 334.98143 * 12 10 8 16 16 N 1.34193 * 118.73572 * 359.97438 * 7 6 5 17 17 C 1.31352 * 120.73195 * 359.97438 * 16 7 6 18 18 N 1.32024 * 122.12327 * 359.73974 * 17 16 7 19 19 H 1.09009 * 109.46772 * 60.00196 * 1 2 3 20 20 H 1.09004 * 109.47204 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47466 * 300.00009 * 1 2 3 22 22 H 1.09004 * 109.46857 * 119.99327 * 2 1 3 23 23 H 1.09000 * 109.47466 * 239.99991 * 2 1 3 24 24 H 1.09001 * 109.47292 * 299.99863 * 3 2 1 25 25 H 1.09001 * 109.47641 * 59.99951 * 3 2 1 26 26 H 1.07996 * 120.95096 * 359.97438 * 6 5 4 27 27 H 0.96999 * 119.99473 * 180.02562 * 11 10 8 28 28 H 1.07999 * 118.93276 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0843 2.6502 0.0012 6 6 5.4738 2.7339 0.0013 7 6 6.0602 4.0117 0.0014 8 6 7.4684 4.1593 0.0020 9 1 8.1023 3.2909 0.1036 10 6 8.0394 5.4318 -0.1290 11 7 7.2768 6.4932 -0.1295 12 14 9.8905 5.6114 -0.3032 13 1 10.2468 5.6917 -1.7427 14 1 10.3348 6.8492 0.3865 15 1 10.5616 4.4361 0.3080 16 7 5.2598 5.0888 0.0009 17 6 3.9532 4.9542 -0.0002 18 7 3.3695 3.7700 -0.0059 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8932 -0.5138 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 6.0839 1.8427 0.0013 27 1 7.6722 7.3743 -0.2206 28 1 3.3365 5.8408 -0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085483380.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:36 Heat of formation + Delta-G solvation = -13.121239 kcal Electronic energy + Delta-G solvation = -12974.422693 eV Core-core repulsion = 10604.330650 eV Total energy + Delta-G solvation = -2370.092043 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.29145 -37.36288 -34.04445 -33.54592 -31.05473 -29.94820 -26.80929 -25.63753 -22.55870 -21.80271 -20.97995 -18.24818 -16.94257 -15.78174 -15.30777 -15.13204 -13.93233 -13.92427 -13.72254 -13.47680 -12.67092 -12.52700 -12.12404 -11.96136 -11.43345 -11.27773 -11.13884 -10.79453 -10.77994 -10.27772 -10.25032 -9.63544 -8.96914 -8.42024 -7.69144 -7.58003 -6.55713 -4.81536 2.66440 2.90332 3.03057 3.07073 3.21430 3.81622 3.93453 4.69601 5.10324 5.16655 5.38765 5.58931 5.70608 5.82684 5.83795 5.87547 6.04248 6.09586 6.28385 6.37532 6.74687 6.95435 7.01991 7.17446 7.36948 8.01384 8.22515 8.54769 8.73367 8.94991 10.05826 10.18391 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.082085 B = 0.006631 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.029577 B = 4221.760957 C = 4533.706904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.076 3.924 4 O -0.321 6.321 5 C 0.343 3.657 6 C -0.344 4.344 7 C 0.286 3.714 8 C -0.416 4.416 9 H 0.090 0.910 10 C 0.068 3.932 11 N -0.706 5.706 12 Si 0.914 3.086 13 H -0.268 1.268 14 H -0.274 1.274 15 H -0.259 1.259 16 N -0.528 5.528 17 C 0.314 3.686 18 N -0.672 5.672 19 H 0.056 0.944 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.111 0.889 27 H 0.277 0.723 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 -5.204 -0.123 7.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C 0.000 4.000 4 O -0.229 6.229 5 C 0.164 3.836 6 C -0.371 4.371 7 C 0.160 3.840 8 C -0.449 4.449 9 H 0.108 0.892 10 C -0.159 4.159 11 N -0.327 5.327 12 Si 0.737 3.263 13 H -0.193 1.193 14 H -0.199 1.199 15 H -0.183 1.183 16 N -0.251 5.251 17 C 0.022 3.978 18 N -0.411 5.411 19 H 0.075 0.925 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.129 0.871 27 H 0.088 0.912 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.304 -4.484 -0.135 6.946 hybrid contribution 1.022 -0.464 -0.100 1.127 sum -4.281 -4.948 -0.235 6.547 Atomic orbital electron populations 1.21659 0.94806 1.01736 1.02164 1.21515 0.95682 0.96117 1.02979 1.22390 0.79505 0.96264 1.01848 1.86111 1.21105 1.26813 1.88857 1.19661 0.89201 0.83892 0.90811 1.21470 0.91071 0.99562 1.24994 1.18576 0.93869 0.85411 0.86173 1.19675 0.89971 0.93964 1.41330 0.89225 1.26158 1.00757 0.95551 0.93421 1.70099 1.36809 0.98904 1.26880 0.86205 0.81609 0.79067 0.79376 1.19265 1.19909 1.18280 1.69319 1.02869 1.32238 1.20637 1.24178 0.90500 0.92168 0.90920 1.67754 1.41617 0.99070 1.32621 0.92500 0.92307 0.92492 0.91378 0.91378 0.92461 0.92477 0.87056 0.91195 0.82169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.15 0.37 -1.19 15 2 C -0.13 -1.69 6.30 -26.74 -0.17 -1.86 15 3 C 0.08 1.34 5.34 37.16 0.20 1.54 15 4 O -0.32 -7.09 10.13 -18.35 -0.19 -7.27 15 5 C 0.34 8.63 7.53 -16.75 -0.13 8.50 15 6 C -0.34 -9.05 9.91 -38.34 -0.38 -9.43 15 7 C 0.29 8.00 6.57 -84.67 -0.56 7.44 15 8 C -0.42 -11.08 9.19 -37.61 -0.35 -11.42 15 9 H 0.09 2.22 7.86 -52.49 -0.41 1.81 15 10 C 0.07 1.71 5.49 -17.35 -0.10 1.61 15 11 N -0.71 -18.37 11.55 55.55 0.64 -17.73 15 12 Si 0.91 18.07 29.56 -169.99 -5.03 13.04 15 13 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 14 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 15 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 16 N -0.53 -14.71 8.07 -12.57 -0.10 -14.81 15 17 C 0.31 7.89 12.27 -92.33 -1.13 6.76 15 18 N -0.67 -16.69 9.36 -14.71 -0.14 -16.82 15 19 H 0.06 0.59 8.14 -51.92 -0.42 0.16 15 20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 15 21 H 0.06 0.59 8.14 -51.93 -0.42 0.16 15 22 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 23 H 0.07 0.90 8.14 -51.93 -0.42 0.47 15 24 H 0.06 1.03 8.12 -51.93 -0.42 0.61 15 25 H 0.06 1.02 8.12 -51.93 -0.42 0.60 15 26 H 0.11 2.75 8.06 -52.49 -0.42 2.32 15 27 H 0.28 6.44 8.29 -40.82 -0.34 6.10 15 28 H 0.16 3.46 8.06 -52.49 -0.42 3.04 15 LS Contribution 251.71 15.07 3.79 3.79 Total: -1.00 -29.73 251.71 -6.60 -36.33 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.35 Total: 1.53 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.24 Total: 1.95 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.40 Total: -49.36 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.19 Total: -7.27 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.73 -6.60 -36.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085483380.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.206 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds