Wall clock time and date at job start Mon Mar 30 2020 02:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47141 * 2 1 4 4 O 1.42900 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.35551 * 116.99890 * 180.02562 * 4 3 2 6 6 C 1.39203 * 120.44397 * 180.02562 * 5 4 3 7 7 C 1.40594 * 118.09283 * 179.97438 * 6 5 4 8 8 C 1.41598 * 120.63126 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99953 * 353.78776 * 8 7 6 10 10 C 1.40080 * 119.99979 * 173.79436 * 8 7 6 11 11 N 1.30693 * 119.99864 * 6.22626 * 10 8 7 12 12 Si 1.86800 * 120.00019 * 186.22946 * 10 8 7 13 13 H 1.48504 * 109.47177 * 94.98159 * 12 10 8 14 14 H 1.48499 * 109.47070 * 214.98407 * 12 10 8 15 15 H 1.48501 * 109.46850 * 334.98143 * 12 10 8 16 16 N 1.34193 * 118.73572 * 359.97438 * 7 6 5 17 17 C 1.31352 * 120.73195 * 359.97438 * 16 7 6 18 18 N 1.32024 * 122.12327 * 359.73974 * 17 16 7 19 19 H 1.09009 * 109.46772 * 60.00196 * 1 2 3 20 20 H 1.09004 * 109.47204 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47466 * 300.00009 * 1 2 3 22 22 H 1.09004 * 109.46857 * 119.99327 * 2 1 3 23 23 H 1.09000 * 109.47466 * 239.99991 * 2 1 3 24 24 H 1.09001 * 109.47292 * 299.99863 * 3 2 1 25 25 H 1.09001 * 109.47641 * 59.99951 * 3 2 1 26 26 H 1.07996 * 120.95096 * 359.97438 * 6 5 4 27 27 H 0.96999 * 119.99473 * 180.02562 * 11 10 8 28 28 H 1.07999 * 118.93276 * 180.02562 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0843 2.6502 0.0012 6 6 5.4738 2.7339 0.0013 7 6 6.0602 4.0117 0.0014 8 6 7.4684 4.1593 0.0020 9 1 8.1023 3.2909 0.1036 10 6 8.0394 5.4318 -0.1290 11 7 7.2768 6.4932 -0.1295 12 14 9.8905 5.6114 -0.3032 13 1 10.2468 5.6917 -1.7427 14 1 10.3348 6.8492 0.3865 15 1 10.5616 4.4361 0.3080 16 7 5.2598 5.0888 0.0009 17 6 3.9532 4.9542 -0.0002 18 7 3.3695 3.7700 -0.0059 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8932 -0.5138 0.8901 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 6.0839 1.8427 0.0013 27 1 7.6722 7.3743 -0.2206 28 1 3.3365 5.8408 -0.0010 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085483380.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:36 Heat of formation + Delta-G solvation = -31.927693 kcal Electronic energy + Delta-G solvation = -12975.238202 eV Core-core repulsion = 10604.330650 eV Total energy + Delta-G solvation = -2370.907552 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.19024 -39.14018 -35.89023 -34.83029 -33.02515 -31.85887 -28.59536 -27.11011 -24.49352 -23.58369 -22.30880 -20.12234 -18.83137 -17.27401 -17.17730 -16.88302 -15.71186 -15.54379 -15.36299 -15.13334 -14.35795 -14.20403 -13.45576 -13.18720 -13.04587 -12.86916 -12.70196 -12.44499 -12.00993 -11.88250 -11.63950 -11.42517 -10.95482 -10.38383 -9.65604 -9.57189 -8.45689 -6.83957 0.71764 0.98984 1.41938 1.56587 1.58105 2.17068 2.28002 2.78418 3.69998 3.79173 3.98984 4.02628 4.11910 4.37559 4.57742 4.58816 4.76969 4.86822 5.04044 5.08073 5.09703 5.17668 5.18628 5.33279 5.51486 6.03577 6.30303 6.62946 6.74042 6.96831 8.09159 8.30437 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.082085 B = 0.006631 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.029577 B = 4221.760957 C = 4533.706904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.070 3.930 4 O -0.326 6.326 5 C 0.342 3.658 6 C -0.370 4.370 7 C 0.255 3.745 8 C -0.440 4.440 9 H 0.098 0.902 10 C 0.023 3.977 11 N -0.739 5.739 12 Si 0.998 3.002 13 H -0.261 1.261 14 H -0.263 1.263 15 H -0.252 1.252 16 N -0.557 5.557 17 C 0.308 3.692 18 N -0.671 5.671 19 H 0.059 0.941 20 H 0.081 0.919 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.117 0.883 27 H 0.288 0.712 28 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 -5.575 -0.225 7.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.005 4.005 4 O -0.233 6.233 5 C 0.162 3.838 6 C -0.397 4.397 7 C 0.129 3.871 8 C -0.473 4.473 9 H 0.116 0.884 10 C -0.201 4.201 11 N -0.360 5.360 12 Si 0.817 3.183 13 H -0.186 1.186 14 H -0.187 1.187 15 H -0.176 1.176 16 N -0.280 5.280 17 C 0.017 3.983 18 N -0.410 5.410 19 H 0.078 0.922 20 H 0.100 0.900 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.135 0.865 27 H 0.099 0.901 28 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.078 -4.879 -0.233 7.046 hybrid contribution 0.840 -0.364 -0.063 0.917 sum -4.238 -5.243 -0.296 6.749 Atomic orbital electron populations 1.21655 0.92295 1.03402 1.02501 1.21545 0.97624 0.92969 1.03404 1.22757 0.77023 0.99341 1.01411 1.86112 1.23636 1.25284 1.88316 1.19830 0.89306 0.84844 0.89786 1.21585 0.92047 0.99445 1.26612 1.19021 0.94898 0.86142 0.87025 1.20128 0.90003 0.95467 1.41686 0.88369 1.27173 1.06226 0.94415 0.92307 1.70157 1.39497 0.99798 1.26535 0.84956 0.74302 0.79477 0.79568 1.18601 1.18714 1.17564 1.69315 1.03917 1.32669 1.22129 1.24796 0.90343 0.93348 0.89858 1.67861 1.41300 0.98988 1.32855 0.92201 0.89970 0.92183 0.90964 0.90977 0.92890 0.92883 0.86515 0.90119 0.79158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.91 71.98 0.71 -1.93 15 2 C -0.12 -2.97 6.30 30.59 0.19 -2.78 15 3 C 0.07 2.42 5.34 71.98 0.38 2.81 15 4 O -0.33 -14.37 10.13 -88.57 -0.90 -15.26 15 5 C 0.34 17.35 7.53 84.77 0.64 17.99 15 6 C -0.37 -19.92 9.91 23.08 0.23 -19.69 15 7 C 0.26 14.55 6.57 40.19 0.26 14.82 15 8 C -0.44 -23.68 9.19 23.55 0.22 -23.47 15 9 H 0.10 4.90 7.86 -2.91 -0.02 4.87 15 10 C 0.02 1.15 5.49 85.31 0.47 1.62 15 11 N -0.74 -38.44 11.55 21.84 0.25 -38.19 15 12 Si 1.00 36.24 29.56 68.60 2.03 38.27 15 13 H -0.26 -9.19 7.11 99.48 0.71 -8.48 15 14 H -0.26 -9.00 7.11 99.48 0.71 -8.30 15 15 H -0.25 -8.80 7.11 99.48 0.71 -8.10 15 16 N -0.56 -31.52 8.07 -193.68 -1.56 -33.08 15 17 C 0.31 15.55 12.27 180.95 2.22 17.77 15 18 N -0.67 -33.41 9.36 -313.09 -2.93 -36.34 15 19 H 0.06 1.09 8.14 -2.38 -0.02 1.07 15 20 H 0.08 1.20 8.14 -2.39 -0.02 1.18 15 21 H 0.06 1.09 8.14 -2.39 -0.02 1.08 15 22 H 0.07 1.77 8.14 -2.38 -0.02 1.75 15 23 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 24 H 0.05 1.87 8.12 -2.39 -0.02 1.85 15 25 H 0.05 1.87 8.12 -2.39 -0.02 1.85 15 26 H 0.12 5.92 8.06 -2.91 -0.02 5.89 15 27 H 0.29 13.26 8.29 -92.71 -0.77 12.49 15 28 H 0.19 8.11 8.06 -2.91 -0.02 8.09 15 Total: -1.00 -63.84 251.71 3.36 -60.48 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 1.15 Total: 16.99 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 5.33 Total: 7.14 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -4.24 Total: -107.61 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.90 Total: -15.26 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Total: -63.84 3.36 -60.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085483380.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.554 kcal (2) G-P(sol) polarization free energy of solvation -63.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds