Wall clock time and date at job start Mon Mar 30 2020 02:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00234 * 2 1 4 4 C 1.50697 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.38292 * 119.53748 * 95.00048 * 4 3 2 6 6 C 1.38495 * 119.23366 * 180.02562 * 5 4 3 7 7 C 1.39296 * 118.36163 * 359.97438 * 6 5 4 8 8 O 1.35759 * 120.48737 * 179.97438 * 7 6 5 9 9 C 1.34823 * 116.99953 * 5.47670 * 8 7 6 10 10 H 1.08004 * 120.00469 * 354.94441 * 9 8 7 11 11 C 1.38661 * 120.00223 * 174.94085 * 9 8 7 12 12 N 1.31557 * 119.99560 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00148 * 179.72373 * 11 9 8 14 14 H 1.48500 * 109.47084 * 270.27602 * 13 11 9 15 15 H 1.48499 * 109.46941 * 30.27746 * 13 11 9 16 16 H 1.48499 * 109.46657 * 150.27739 * 13 11 9 17 17 C 1.38852 * 119.02220 * 0.25669 * 7 6 5 18 18 N 1.31810 * 120.66974 * 359.49499 * 17 7 6 19 19 H 1.08999 * 109.47794 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47006 * 300.00204 * 1 2 3 21 21 H 1.08997 * 109.47087 * 59.99718 * 1 2 3 22 22 H 1.00899 * 110.99970 * 123.95735 * 2 1 3 23 23 H 1.08999 * 109.46992 * 60.00164 * 3 2 1 24 24 H 1.09000 * 109.47018 * 300.00723 * 3 2 1 25 25 H 1.07994 * 120.38479 * 0.02562 * 5 4 3 26 26 H 1.08001 * 120.82209 * 179.97438 * 6 5 4 27 27 H 0.97001 * 120.00205 * 359.73044 * 12 11 9 28 28 H 1.08003 * 119.66315 * 179.72160 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3311 -0.0006 5 6 4.1858 1.4180 -1.1995 6 6 5.5702 1.3798 -1.1928 7 6 6.2228 1.2550 0.0314 8 8 7.5785 1.2127 0.0881 9 6 8.2459 1.4102 -1.0666 10 1 7.7021 1.5104 -1.9944 11 6 9.6305 1.4847 -1.0632 12 7 10.2930 1.3623 0.0668 13 14 10.5555 1.7506 -2.6642 14 1 10.8698 0.4357 -3.2785 15 1 9.7143 2.5439 -3.5960 16 1 11.8177 2.4836 -2.3906 17 6 5.4661 1.1685 1.1925 18 7 4.1497 1.2136 1.1420 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.8306 -0.5262 0.7813 23 1 1.6461 1.8947 0.8900 24 1 1.6459 1.8948 -0.8899 25 1 3.6465 1.5144 -2.1302 26 1 6.1300 1.4451 -2.1141 27 1 9.8126 1.2237 0.8980 28 1 5.9613 1.0670 2.1469 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086790501.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:53 Heat of formation + Delta-G solvation = -0.946703 kcal Electronic energy + Delta-G solvation = -12910.604451 eV Core-core repulsion = 10541.040336 eV Total energy + Delta-G solvation = -2369.564115 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.71754 -37.55280 -35.58086 -32.48814 -31.40127 -30.20728 -26.63174 -24.97710 -23.35032 -22.74741 -21.13167 -18.50680 -17.03707 -16.38042 -15.67243 -14.84094 -14.55246 -14.02961 -13.97750 -13.88516 -13.64158 -12.76361 -12.67819 -12.24069 -11.88996 -11.63686 -11.18559 -10.95266 -10.62430 -10.38190 -9.89185 -9.05277 -8.86696 -8.81122 -8.38643 -7.51252 -6.90498 -4.19278 1.93623 2.09235 3.18013 3.23939 3.37390 4.00980 4.25203 4.69978 4.83456 5.04640 5.16030 5.19639 5.37942 5.44894 5.58615 5.72521 5.80516 5.81280 6.01962 6.20962 6.49877 6.83348 6.97605 7.03809 7.34263 7.41994 7.42383 8.24811 8.68795 8.78060 9.42321 10.53452 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.072821 B = 0.006467 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.409545 B = 4328.503675 C = 4607.980582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.692 5.692 3 C 0.129 3.871 4 C 0.015 3.985 5 C -0.097 4.097 6 C -0.198 4.198 7 C 0.109 3.891 8 O -0.190 6.190 9 C -0.474 4.474 10 H 0.085 0.915 11 C 0.013 3.987 12 N -0.874 5.874 13 Si 1.099 2.901 14 H -0.279 1.279 15 H -0.282 1.282 16 H -0.274 1.274 17 C 0.026 3.974 18 N -0.442 5.442 19 H 0.065 0.935 20 H 0.019 0.981 21 H 0.062 0.938 22 H 0.346 0.654 23 H 0.038 0.962 24 H 0.077 0.923 25 H 0.120 0.880 26 H 0.137 0.863 27 H 0.284 0.716 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.895 -0.098 -2.436 12.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.323 5.323 3 C 0.000 4.000 4 C -0.122 4.122 5 C -0.117 4.117 6 C -0.224 4.224 7 C 0.053 3.947 8 O -0.093 6.093 9 C -0.549 4.549 10 H 0.103 0.897 11 C -0.194 4.194 12 N -0.505 5.505 13 Si 0.923 3.077 14 H -0.205 1.205 15 H -0.207 1.207 16 H -0.199 1.199 17 C -0.136 4.136 18 N -0.152 5.152 19 H 0.083 0.917 20 H 0.038 0.962 21 H 0.081 0.919 22 H 0.164 0.836 23 H 0.056 0.944 24 H 0.095 0.905 25 H 0.138 0.862 26 H 0.155 0.845 27 H 0.094 0.906 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.588 -0.078 -2.820 10.957 hybrid contribution -1.312 0.132 0.620 1.457 sum -11.900 0.055 -2.200 12.102 Atomic orbital electron populations 1.22183 0.88276 1.01569 1.00132 1.60467 1.06971 1.14366 1.50508 1.20502 0.89545 0.89472 1.00510 1.20351 0.94849 1.08094 0.88894 1.21537 0.93839 0.98161 0.98191 1.21561 0.94363 1.07843 0.98648 1.20320 0.85256 0.94704 0.94424 1.83662 1.12792 1.76988 1.35818 1.22294 0.92039 1.55751 0.84867 0.89719 1.26623 0.92018 0.94990 1.05729 1.70545 1.39533 1.40699 0.99699 0.83045 0.75844 0.77425 0.71392 1.20525 1.20716 1.19898 1.21691 0.88334 1.07094 0.96440 1.67164 1.08790 1.10049 1.29178 0.91659 0.96247 0.91897 0.83639 0.94386 0.90510 0.86245 0.84540 0.90563 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 60.07 0.64 0.94 15 2 N -0.69 -9.61 6.84 -122.42 -0.84 -10.44 15 3 C 0.13 1.91 5.99 -4.98 -0.03 1.88 15 4 C 0.02 0.28 6.29 -82.56 -0.52 -0.24 15 5 C -0.10 -1.83 9.71 -39.47 -0.38 -2.21 15 6 C -0.20 -4.31 9.27 -39.09 -0.36 -4.68 15 7 C 0.11 2.63 6.67 -38.96 -0.26 2.37 15 8 O -0.19 -5.25 9.17 0.04 0.00 -5.24 15 9 C -0.47 -13.02 9.50 30.89 0.29 -12.73 15 10 H 0.09 2.18 5.26 -52.48 -0.28 1.91 15 11 C 0.01 0.35 5.49 -17.51 -0.10 0.25 15 12 N -0.87 -25.50 13.70 55.48 0.76 -24.74 15 13 Si 1.10 23.11 29.92 -169.99 -5.09 18.03 15 14 H -0.28 -5.60 7.11 56.52 0.40 -5.20 15 15 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 17 C 0.03 0.57 11.15 -17.33 -0.19 0.38 15 18 N -0.44 -8.98 10.26 -9.31 -0.10 -9.08 15 19 H 0.06 0.61 8.14 -51.93 -0.42 0.18 15 20 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 15 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 22 H 0.35 4.93 8.81 -39.29 -0.35 4.58 15 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 15 24 H 0.08 1.02 8.04 -51.93 -0.42 0.60 15 25 H 0.12 1.90 8.06 -52.49 -0.42 1.48 15 26 H 0.14 2.94 5.76 -52.49 -0.30 2.64 15 27 H 0.28 8.46 7.97 -40.82 -0.33 8.13 15 28 H 0.15 2.98 8.06 -52.48 -0.42 2.56 15 LS Contribution 250.51 15.07 3.78 3.78 Total: -1.00 -29.79 250.51 -5.39 -35.18 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.00 Total: 6.56 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.91 Total: -14.02 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.17 Total: -44.26 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.09 Total: 18.03 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.79 -5.39 -35.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086790501.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.230 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds