Wall clock time and date at job start Mon Mar 30 2020 02:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00234 * 2 1 4 4 C 1.50697 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.38292 * 119.53748 * 95.00048 * 4 3 2 6 6 C 1.38495 * 119.23366 * 180.02562 * 5 4 3 7 7 C 1.39296 * 118.36163 * 359.97438 * 6 5 4 8 8 O 1.35759 * 120.48737 * 179.97438 * 7 6 5 9 9 C 1.34823 * 116.99953 * 5.47670 * 8 7 6 10 10 H 1.08004 * 120.00469 * 354.94441 * 9 8 7 11 11 C 1.38661 * 120.00223 * 174.94085 * 9 8 7 12 12 N 1.31557 * 119.99560 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00148 * 179.72373 * 11 9 8 14 14 H 1.48500 * 109.47084 * 270.27602 * 13 11 9 15 15 H 1.48499 * 109.46941 * 30.27746 * 13 11 9 16 16 H 1.48499 * 109.46657 * 150.27739 * 13 11 9 17 17 C 1.38852 * 119.02220 * 0.25669 * 7 6 5 18 18 N 1.31810 * 120.66974 * 359.49499 * 17 7 6 19 19 H 1.08999 * 109.47794 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47006 * 300.00204 * 1 2 3 21 21 H 1.08997 * 109.47087 * 59.99718 * 1 2 3 22 22 H 1.00899 * 110.99970 * 123.95735 * 2 1 3 23 23 H 1.08999 * 109.46992 * 60.00164 * 3 2 1 24 24 H 1.09000 * 109.47018 * 300.00723 * 3 2 1 25 25 H 1.07994 * 120.38479 * 0.02562 * 5 4 3 26 26 H 1.08001 * 120.82209 * 179.97438 * 6 5 4 27 27 H 0.97001 * 120.00205 * 359.73044 * 12 11 9 28 28 H 1.08003 * 119.66315 * 179.72160 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5019 1.3311 -0.0006 5 6 4.1858 1.4180 -1.1995 6 6 5.5702 1.3798 -1.1928 7 6 6.2228 1.2550 0.0314 8 8 7.5785 1.2127 0.0881 9 6 8.2459 1.4102 -1.0666 10 1 7.7021 1.5104 -1.9944 11 6 9.6305 1.4847 -1.0632 12 7 10.2930 1.3623 0.0668 13 14 10.5555 1.7506 -2.6642 14 1 10.8698 0.4357 -3.2785 15 1 9.7143 2.5439 -3.5960 16 1 11.8177 2.4836 -2.3906 17 6 5.4661 1.1685 1.1925 18 7 4.1497 1.2136 1.1420 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.8306 -0.5262 0.7813 23 1 1.6461 1.8947 0.8900 24 1 1.6459 1.8948 -0.8899 25 1 3.6465 1.5144 -2.1302 26 1 6.1300 1.4451 -2.1141 27 1 9.8126 1.2237 0.8980 28 1 5.9613 1.0670 2.1469 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086790501.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:53 Heat of formation + Delta-G solvation = -23.133962 kcal Electronic energy + Delta-G solvation = -12911.566563 eV Core-core repulsion = 10541.040336 eV Total energy + Delta-G solvation = -2370.526227 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.44967 -39.32378 -36.76199 -34.44493 -33.07378 -31.75197 -28.09236 -26.71849 -24.66201 -24.35900 -22.72021 -20.38510 -18.85333 -17.88156 -17.29953 -16.21934 -16.00093 -15.69489 -15.57469 -15.44311 -15.09417 -14.44420 -14.06442 -13.80132 -12.99200 -12.80647 -12.63708 -12.51163 -12.37091 -11.92662 -11.80676 -10.90159 -10.58914 -10.49591 -9.51043 -9.24958 -8.99793 -6.31064 0.25975 0.38340 1.49540 1.62103 1.77700 2.31188 2.71482 3.02459 3.09138 3.44906 3.63404 3.82131 3.96811 4.20520 4.35597 4.48114 4.63794 4.68247 4.74405 4.85020 5.05478 5.08693 5.24920 5.44802 5.69521 6.01500 6.14857 6.33534 6.77256 7.02731 7.49164 8.44714 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.072821 B = 0.006467 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.409545 B = 4328.503675 C = 4607.980582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.703 5.703 3 C 0.131 3.869 4 C 0.036 3.964 5 C -0.094 4.094 6 C -0.197 4.197 7 C 0.077 3.923 8 O -0.236 6.236 9 C -0.491 4.491 10 H 0.095 0.905 11 C -0.039 4.039 12 N -0.912 5.912 13 Si 1.147 2.853 14 H -0.264 1.264 15 H -0.257 1.257 16 H -0.274 1.274 17 C 0.021 3.979 18 N -0.447 5.447 19 H 0.077 0.923 20 H 0.027 0.973 21 H 0.074 0.926 22 H 0.341 0.659 23 H 0.044 0.956 24 H 0.103 0.897 25 H 0.160 0.840 26 H 0.137 0.863 27 H 0.263 0.737 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.635 0.105 -4.163 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.334 5.334 3 C 0.002 3.998 4 C -0.103 4.103 5 C -0.114 4.114 6 C -0.224 4.224 7 C 0.024 3.976 8 O -0.142 6.142 9 C -0.567 4.567 10 H 0.113 0.887 11 C -0.236 4.236 12 N -0.546 5.546 13 Si 0.963 3.037 14 H -0.189 1.189 15 H -0.181 1.181 16 H -0.199 1.199 17 C -0.139 4.139 18 N -0.157 5.157 19 H 0.096 0.904 20 H 0.046 0.954 21 H 0.093 0.907 22 H 0.158 0.842 23 H 0.062 0.938 24 H 0.121 0.879 25 H 0.178 0.822 26 H 0.155 0.845 27 H 0.072 0.928 28 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.395 0.119 -4.529 14.141 hybrid contribution -0.912 0.052 1.206 1.513 sum -14.307 0.171 -3.323 14.689 Atomic orbital electron populations 1.22266 0.85932 1.02786 1.01058 1.60475 1.09157 1.13343 1.50442 1.20605 0.86414 0.90651 1.02155 1.21223 0.97134 1.03704 0.88238 1.21960 0.92589 0.96711 1.00104 1.21788 0.95875 1.06899 0.97839 1.20774 0.84646 0.96071 0.96151 1.83657 1.14381 1.79996 1.36132 1.22673 0.92667 1.55918 0.85452 0.88722 1.28423 0.93225 0.93874 1.08127 1.70679 1.39312 1.44810 0.99764 0.82548 0.74885 0.78386 0.67923 1.18873 1.18086 1.19862 1.21874 0.88984 1.06710 0.96337 1.67316 1.07808 1.10447 1.30161 0.90428 0.95446 0.90733 0.84176 0.93798 0.87923 0.82207 0.84506 0.92821 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.70 127.69 1.37 1.85 15 2 N -0.70 -16.85 6.84 -541.23 -3.70 -20.55 15 3 C 0.13 3.33 5.99 85.56 0.51 3.84 15 4 C 0.04 1.22 6.29 42.56 0.27 1.49 15 5 C -0.09 -3.23 9.71 22.34 0.22 -3.02 15 6 C -0.20 -8.40 9.27 22.59 0.21 -8.19 15 7 C 0.08 3.74 6.67 22.67 0.15 3.90 15 8 O -0.24 -13.61 9.17 -22.77 -0.21 -13.82 15 9 C -0.49 -27.82 9.50 67.92 0.65 -27.18 15 10 H 0.10 4.94 5.26 -2.91 -0.02 4.92 15 11 C -0.04 -2.19 5.49 84.83 0.47 -1.72 15 12 N -0.91 -55.76 13.70 21.62 0.30 -55.46 15 13 Si 1.15 46.56 29.92 68.60 2.05 48.62 15 14 H -0.26 -9.94 7.11 99.48 0.71 -9.24 15 15 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 16 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 17 C 0.02 0.90 11.15 84.84 0.95 1.85 15 18 N -0.45 -17.48 10.26 -183.35 -1.88 -19.36 15 19 H 0.08 1.15 8.14 -2.39 -0.02 1.13 15 20 H 0.03 0.43 8.14 -2.38 -0.02 0.41 15 21 H 0.07 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.34 8.71 8.81 -89.69 -0.79 7.92 15 23 H 0.04 1.10 8.14 -2.39 -0.02 1.08 15 24 H 0.10 2.15 8.04 -2.39 -0.02 2.13 15 25 H 0.16 4.25 8.06 -2.91 -0.02 4.23 15 26 H 0.14 5.77 5.76 -2.91 -0.02 5.75 15 27 H 0.26 16.74 7.97 -92.71 -0.74 16.00 15 28 H 0.15 6.36 8.06 -2.91 -0.02 6.34 15 Total: -1.00 -66.56 250.51 1.75 -64.81 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.42 Total: 22.96 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 4.78 Total: -27.19 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -5.29 Total: -95.37 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.21 Total: -13.82 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.05 Total: 48.62 kcal Total: -66.56 1.75 -64.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086790501.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.673 kcal (2) G-P(sol) polarization free energy of solvation -66.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds