Wall clock time and date at job start Mon Mar 30 2020 02:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00094 * 2 1 4 4 C 1.50701 * 109.47210 * 269.99984 * 3 2 1 5 5 H 1.08001 * 119.99680 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00373 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99862 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47054 * 60.00721 * 8 6 4 10 10 H 1.48508 * 109.46950 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47421 * 300.00348 * 8 6 4 12 12 C 1.34776 * 119.99731 * 179.97438 * 2 1 3 13 13 O 1.21281 * 119.99608 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00426 * 0.02562 * 12 2 1 15 15 C 1.47205 * 115.55559 * 325.68389 * 14 12 2 16 16 N 3.64588 * 50.37263 * 151.81476 * 2 1 3 17 17 C 1.53000 * 117.50321 * 179.97438 * 14 12 2 18 18 C 1.52997 * 117.50247 * 111.36997 * 14 12 2 19 19 H 1.09004 * 109.47058 * 270.00206 * 1 2 3 20 20 H 1.09001 * 109.47423 * 30.00150 * 1 2 3 21 21 H 1.09003 * 109.47426 * 150.00352 * 1 2 3 22 22 H 1.09000 * 109.47352 * 30.00036 * 3 2 1 23 23 H 1.09003 * 109.47149 * 149.99962 * 3 2 1 24 24 H 0.97000 * 120.00326 * 179.97438 * 7 6 4 25 25 H 1.08990 * 117.49990 * 145.01584 * 17 14 12 26 26 H 1.09004 * 117.49237 * 359.97438 * 17 14 12 27 27 H 1.08999 * 117.49685 * 0.02562 * 18 14 12 28 28 H 1.08999 * 117.52022 * 214.97066 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6180 -0.6733 8 14 3.4379 3.4167 -3.4340 9 1 2.1406 3.5936 -4.1347 10 1 4.1804 4.7029 -3.4340 11 1 4.2412 2.3820 -4.1334 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 6 0.1176 -2.4737 0.7487 16 7 -0.8603 -2.4751 1.3263 17 6 2.2074 -3.7628 0.0005 18 6 1.4609 -3.3317 -1.2630 19 1 -0.3633 0.0000 1.0277 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3634 -0.8900 -0.5138 22 1 1.6085 2.0284 0.5138 23 1 3.1499 1.1383 0.5139 24 1 4.0302 4.4439 -0.8505 25 1 1.8097 -4.6128 0.5548 26 1 3.2933 -3.6676 0.0001 27 1 2.0559 -2.9533 -2.0942 28 1 0.5721 -3.8985 -1.5405 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087671590.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:16 Heat of formation + Delta-G solvation = 7.802154 kcal Electronic energy + Delta-G solvation = -13368.646172 eV Core-core repulsion = 10999.461436 eV Total energy + Delta-G solvation = -2369.184736 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.38920 -38.35185 -37.23318 -36.10304 -34.69937 -30.15449 -27.70822 -26.62708 -24.39020 -23.46088 -21.44850 -19.05333 -18.69231 -17.35645 -16.86662 -16.37945 -16.15105 -15.37289 -14.81382 -14.79102 -14.27328 -14.21327 -13.84139 -13.64832 -13.46279 -13.01902 -12.77211 -12.50958 -12.44236 -12.19132 -11.91823 -11.75748 -11.44477 -10.78725 -10.63253 -9.57922 -8.22068 -6.37310 1.24212 1.40696 1.44578 1.46986 1.51916 1.69638 2.14651 2.42178 2.55212 2.93340 3.08360 3.43038 3.65006 3.88402 4.13796 4.42503 4.58368 4.69990 4.72453 4.94597 4.94842 5.18097 5.20525 5.48157 5.75420 6.02846 6.32160 6.55597 6.71232 7.17886 7.35839 8.85639 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.043351 B = 0.008846 C = 0.008323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.739290 B = 3164.414469 C = 3363.438183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.603 5.603 3 C 0.259 3.741 4 C -0.545 4.545 5 H 0.060 0.940 6 C 0.008 3.992 7 N -0.930 5.930 8 Si 0.971 3.029 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.272 1.272 12 C 0.543 3.457 13 O -0.568 6.568 14 C -0.113 4.113 15 C 0.269 3.731 16 N -0.448 5.448 17 C -0.099 4.099 18 C -0.099 4.099 19 H 0.050 0.950 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.021 0.979 23 H 0.006 0.994 24 H 0.268 0.732 25 H 0.142 0.858 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 -13.114 -2.500 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.333 5.333 3 C 0.138 3.862 4 C -0.583 4.583 5 H 0.078 0.922 6 C -0.191 4.191 7 N -0.569 5.569 8 Si 0.795 3.205 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.197 1.197 12 C 0.330 3.670 13 O -0.448 6.448 14 C -0.120 4.120 15 C -0.047 4.047 16 N -0.124 5.124 17 C -0.138 4.138 18 C -0.137 4.137 19 H 0.069 0.931 20 H 0.096 0.904 21 H 0.102 0.898 22 H 0.039 0.961 23 H 0.025 0.975 24 H 0.077 0.923 25 H 0.160 0.840 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.412 -12.898 -1.553 14.488 hybrid contribution 0.651 1.047 -0.582 1.364 sum -5.761 -11.851 -2.135 13.349 Atomic orbital electron populations 1.22001 0.78992 1.03822 1.01241 1.48091 1.07668 1.06794 1.70733 1.18862 0.91106 0.79572 0.96672 1.21654 1.37148 1.06814 0.92717 0.92198 1.25886 0.94767 0.96280 1.02152 1.70049 1.38752 1.14814 1.33290 0.85414 0.78804 0.77404 0.78883 1.18634 1.20631 1.19702 1.19482 0.86938 0.84177 0.76450 1.90674 1.14865 1.87108 1.52148 1.18392 0.91352 0.94118 1.08151 1.27154 0.92580 0.92355 0.92641 1.81280 1.11840 1.09126 1.10190 1.23400 1.00100 0.90779 0.99482 1.23454 1.04264 0.96168 0.89816 0.93136 0.90381 0.89839 0.96088 0.97543 0.92346 0.83994 0.86474 0.86580 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.84 8.84 127.77 1.13 3.97 15 2 N -0.60 -26.15 2.86 -851.13 -2.43 -28.58 15 3 C 0.26 13.97 5.16 85.63 0.44 14.41 15 4 C -0.54 -30.81 9.39 25.60 0.24 -30.57 15 5 H 0.06 3.29 7.81 -2.91 -0.02 3.27 15 6 C 0.01 0.47 5.46 84.66 0.46 0.93 15 7 N -0.93 -55.73 13.29 21.45 0.28 -55.45 15 8 Si 0.97 43.80 29.54 68.60 2.03 45.83 15 9 H -0.26 -11.12 7.11 99.48 0.71 -10.41 15 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 12 C 0.54 21.91 7.29 87.66 0.64 22.55 15 13 O -0.57 -27.47 15.84 -3.03 -0.05 -27.52 15 14 C -0.11 -3.06 2.00 -54.73 -0.11 -3.17 15 15 C 0.27 7.37 11.13 89.45 1.00 8.36 15 16 N -0.45 -13.35 17.98 20.00 0.36 -12.99 15 17 C -0.10 -1.88 9.72 30.58 0.30 -1.58 15 18 C -0.10 -1.78 9.91 30.58 0.30 -1.48 15 19 H 0.05 1.68 7.48 -2.39 -0.02 1.66 15 20 H 0.08 2.70 8.07 -2.39 -0.02 2.68 15 21 H 0.08 2.44 5.56 -2.39 -0.01 2.42 15 22 H 0.02 1.17 8.07 -2.39 -0.02 1.15 15 23 H 0.01 0.40 7.42 -2.39 -0.02 0.38 15 24 H 0.27 15.07 8.31 -92.71 -0.77 14.30 15 25 H 0.14 1.76 8.14 -2.39 -0.02 1.74 15 26 H 0.12 2.52 7.67 -2.38 -0.02 2.50 15 27 H 0.12 2.27 8.14 -2.39 -0.02 2.25 15 28 H 0.15 1.64 8.14 -2.39 -0.02 1.62 15 Total: -1.00 -70.47 254.53 5.75 -64.72 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: 1.16 Total: 0.58 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 4.40 Total: 13.41 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -1.79 Total: -97.02 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.05 Total: -27.52 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -70.47 5.75 -64.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087671590.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.518 kcal (2) G-P(sol) polarization free energy of solvation -70.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds