Wall clock time and date at job start Mon Mar 30 2020 02:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00133 * 2 1 4 4 C 1.50709 * 109.46788 * 270.00192 * 3 2 1 5 5 H 1.07994 * 120.00239 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99541 * 179.97438 * 4 3 2 7 7 N 1.31507 * 120.00018 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99795 * 179.97438 * 6 4 3 9 9 H 1.48509 * 109.47118 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47152 * 119.99815 * 8 6 4 11 11 H 1.48502 * 109.47185 * 240.00071 * 8 6 4 12 12 C 1.39355 * 119.99873 * 179.97438 * 2 1 3 13 13 C 1.39059 * 120.00317 * 5.00022 * 12 2 1 14 14 N 1.32094 * 119.99554 * 179.97438 * 13 12 2 15 15 C 1.32705 * 120.00340 * 359.97438 * 14 13 12 16 16 N 1.39365 * 119.99967 * 180.02562 * 15 14 13 17 17 C 1.39019 * 120.00165 * 0.27565 * 15 14 13 18 18 N 1.32118 * 119.99934 * 359.43889 * 17 15 14 19 19 H 1.08993 * 109.47499 * 270.00057 * 1 2 3 20 20 H 1.08996 * 109.47265 * 30.00808 * 1 2 3 21 21 H 1.09004 * 109.46697 * 150.00028 * 1 2 3 22 22 H 1.09004 * 109.47228 * 29.99566 * 3 2 1 23 23 H 1.08996 * 109.47147 * 149.99933 * 3 2 1 24 24 H 0.97006 * 119.99973 * 180.02562 * 7 6 4 25 25 H 1.07999 * 120.00110 * 359.95831 * 13 12 2 26 26 H 0.96991 * 119.99729 * 0.02562 * 16 15 14 27 27 H 0.97004 * 119.99638 * 179.72724 * 16 15 14 28 28 H 1.08001 * 119.99532 * 179.72434 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2418 6 6 3.1260 2.8779 -1.6728 7 7 3.5524 3.6185 -0.6733 8 14 3.4379 3.4168 -3.4340 9 1 2.8607 2.4163 -4.3674 10 1 2.7998 4.7371 -3.6680 11 1 4.9005 3.5257 -3.6667 12 6 2.1617 -1.2069 0.0005 13 6 1.4705 -2.4089 -0.1039 14 7 2.1311 -3.5528 -0.1039 15 6 3.4544 -3.5548 -0.0047 16 7 4.1514 -4.7617 -0.0052 17 6 4.1451 -2.3534 0.1049 18 7 3.4849 -1.2090 0.0992 19 1 -0.3634 0.0000 1.0276 20 1 -0.3633 0.8899 -0.5139 21 1 -0.3633 -0.8900 -0.5139 22 1 1.6084 2.0284 0.5138 23 1 3.1499 1.1383 0.5138 24 1 4.0287 4.4448 -0.8505 25 1 0.3935 -2.4073 -0.1847 26 1 3.6692 -5.6001 -0.0785 27 1 5.1190 -4.7629 0.0632 28 1 5.2218 -2.3553 0.1901 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087733332.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:54 Heat of formation + Delta-G solvation = 64.795292 kcal Electronic energy + Delta-G solvation = -13239.767296 eV Core-core repulsion = 10905.346718 eV Total energy + Delta-G solvation = -2334.420577 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.30989 -36.43712 -34.02306 -33.07355 -32.48679 -28.56356 -27.81386 -25.12257 -23.90279 -22.81430 -20.66962 -17.61171 -17.00995 -16.47615 -16.20683 -15.11391 -14.55722 -14.48591 -14.20980 -13.38311 -13.13297 -12.90951 -12.08725 -11.56808 -11.27095 -11.18286 -10.85453 -10.79280 -10.41243 -10.10008 -10.05808 -9.59171 -8.44154 -8.41227 -8.30995 -6.40202 -5.93883 -4.05268 1.63607 2.14852 3.30247 3.37792 3.42299 3.73193 4.04462 4.45308 4.55192 5.02396 5.10742 5.31470 5.33698 5.72072 5.75966 5.98774 6.03727 6.27643 6.55119 7.08262 7.46908 7.50044 7.71433 7.86829 7.95382 8.24047 8.30704 8.50144 8.78672 9.01566 9.59204 11.06488 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.037997 B = 0.008821 C = 0.007949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.720259 B = 3173.477219 C = 3521.618996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.594 5.594 3 C 0.253 3.747 4 C -0.522 4.522 5 H 0.055 0.945 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.329 3.671 13 C 0.005 3.995 14 N -0.467 5.467 15 C 0.263 3.737 16 N -0.863 5.863 17 C 0.053 3.947 18 N -0.450 5.450 19 H 0.041 0.959 20 H 0.074 0.926 21 H 0.056 0.944 22 H 0.028 0.972 23 H 0.048 0.952 24 H 0.262 0.738 25 H 0.158 0.842 26 H 0.396 0.604 27 H 0.402 0.598 28 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 -11.496 1.786 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.305 5.305 3 C 0.134 3.866 4 C -0.561 4.561 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.091 3.909 13 C -0.163 4.163 14 N -0.189 5.189 15 C 0.024 3.976 16 N -0.411 5.411 17 C -0.116 4.116 18 N -0.171 5.171 19 H 0.059 0.941 20 H 0.093 0.907 21 H 0.074 0.926 22 H 0.046 0.954 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.175 0.825 26 H 0.224 0.776 27 H 0.231 0.769 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.860 -10.995 1.831 11.300 hybrid contribution 0.470 0.101 -1.066 1.170 sum -1.389 -10.894 0.764 11.009 Atomic orbital electron populations 1.21553 0.80305 1.02359 1.00160 1.46880 1.04285 1.03892 1.75473 1.19276 0.92505 0.77780 0.97066 1.21542 1.35984 1.06029 0.92570 0.92644 1.24919 0.95542 0.96434 0.97173 1.69942 1.38701 1.14302 1.30527 0.86497 0.77992 0.78323 0.84914 1.19924 1.21019 1.20945 1.19169 0.89041 0.87763 0.94971 1.22651 1.00369 0.86561 1.06757 1.67576 1.06890 1.29616 1.14791 1.18965 0.89405 0.87900 1.01363 1.41756 1.08334 1.04376 1.86678 1.22776 1.00401 0.86471 1.01970 1.67985 1.07188 1.27826 1.14072 0.94052 0.90717 0.92579 0.95416 0.93424 0.92872 0.82492 0.77631 0.76881 0.82860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.68 10.29 59.85 0.62 2.30 15 2 N -0.59 -12.97 2.98 -182.93 -0.55 -13.52 15 3 C 0.25 6.63 5.23 -5.19 -0.03 6.60 15 4 C -0.52 -14.79 9.39 -34.43 -0.32 -15.11 15 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 15 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 7 N -0.90 -26.51 13.29 55.43 0.74 -25.78 15 8 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 15 9 H -0.27 -6.69 7.11 56.52 0.40 -6.28 15 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 15 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 12 C 0.33 6.99 7.37 -154.46 -1.14 5.85 15 13 C 0.00 0.08 10.42 -17.13 -0.18 -0.10 15 14 N -0.47 -8.34 10.52 -12.03 -0.13 -8.47 15 15 C 0.26 4.32 7.77 -154.45 -1.20 3.12 15 16 N -0.86 -10.05 9.10 31.23 0.28 -9.77 15 17 C 0.05 0.94 11.07 -17.14 -0.19 0.75 15 18 N -0.45 -9.91 9.25 -12.03 -0.11 -10.03 15 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.07 1.27 8.07 -51.93 -0.42 0.85 15 21 H 0.06 0.80 6.00 -51.93 -0.31 0.48 15 22 H 0.03 0.75 8.07 -51.93 -0.42 0.33 15 23 H 0.05 1.37 7.32 -51.93 -0.38 0.99 15 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 25 H 0.16 2.43 6.03 -52.49 -0.32 2.11 15 26 H 0.40 4.10 8.96 -40.82 -0.37 3.73 15 27 H 0.40 3.52 8.84 -40.82 -0.36 3.16 15 28 H 0.15 2.23 8.06 -52.49 -0.42 1.80 15 LS Contribution 248.60 15.07 3.75 3.75 Total: -1.00 -32.70 248.60 -6.54 -39.24 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -2.96 Total: 2.61 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.54 Total: 5.07 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: 0.24 Total: -67.55 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.70 -6.54 -39.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087733332.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.037 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds