Wall clock time and date at job start Mon Mar 30 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35679 * 116.99830 * 2 1 4 4 C 1.38923 * 119.67954 * 180.02562 * 3 2 1 5 5 C 1.38383 * 119.10505 * 179.77119 * 4 3 2 6 6 C 1.38824 * 118.48834 * 0.44713 * 5 4 3 7 7 C 1.50698 * 120.35473 * 179.80616 * 6 5 4 8 8 H 1.08999 * 109.47369 * 339.72056 * 7 6 5 9 9 N 1.46902 * 109.47013 * 219.72276 * 7 6 5 10 10 C 1.50698 * 109.47146 * 99.72230 * 7 6 5 11 11 H 1.07998 * 120.00209 * 5.58416 * 10 7 6 12 12 C 1.37883 * 119.99802 * 185.58033 * 10 7 6 13 13 N 1.31516 * 119.99875 * 194.89083 * 12 10 7 14 14 Si 1.86800 * 120.00017 * 14.89069 * 12 10 7 15 15 H 1.48504 * 109.46962 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47297 * 59.99752 * 14 12 10 17 17 H 1.48500 * 109.47171 * 299.99683 * 14 12 10 18 18 C 1.38050 * 119.28954 * 359.53280 * 6 5 4 19 19 N 1.31959 * 120.83226 * 0.24479 * 18 6 5 20 20 H 1.09008 * 109.46761 * 300.00130 * 1 2 3 21 21 H 1.08999 * 109.47107 * 59.99409 * 1 2 3 22 22 H 1.09000 * 109.47507 * 180.02562 * 1 2 3 23 23 H 1.08000 * 120.44841 * 0.02562 * 4 3 2 24 24 H 1.08007 * 120.75260 * 180.25113 * 5 4 3 25 25 H 1.00899 * 111.00155 * 179.47494 * 9 7 6 26 26 H 1.00895 * 111.00083 * 303.43607 * 9 7 6 27 27 H 0.97000 * 119.99681 * 354.89447 * 13 12 10 28 28 H 1.08000 * 119.58091 * 180.27458 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4327 1.2739 -0.0005 5 6 4.0485 2.5132 -0.0054 6 6 3.2505 3.6491 0.0000 7 6 3.8768 5.0198 -0.0005 8 1 4.9062 4.9491 0.3510 9 7 3.1154 5.9065 0.8894 10 6 3.8612 5.5787 -1.3999 11 1 3.3603 5.0403 -2.1909 12 6 4.4863 6.7775 -1.6705 13 7 4.2349 7.4111 -2.7952 14 14 5.6903 7.5017 -0.4396 15 1 6.2218 8.7856 -0.9636 16 1 6.8120 6.5522 -0.2269 17 1 4.9948 7.7430 0.8501 18 6 1.8771 3.5097 0.0001 19 7 1.3186 2.3141 0.0000 20 1 -0.3633 0.5139 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 4.0229 0.3695 -0.0014 24 1 5.1254 2.5947 -0.0100 25 1 3.5208 6.8301 0.9130 26 1 2.1445 5.9445 0.6176 27 1 3.6678 7.0007 -3.4667 28 1 1.2518 4.3903 -0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095664991.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:26 Heat of formation + Delta-G solvation = -28.965954 kcal Electronic energy + Delta-G solvation = -13262.185851 eV Core-core repulsion = 10891.406730 eV Total energy + Delta-G solvation = -2370.779121 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.56169 -39.10929 -36.69905 -34.03276 -33.32515 -31.03954 -28.26480 -27.67496 -24.92722 -24.04522 -21.88042 -19.84371 -19.35428 -18.16508 -16.95074 -16.94730 -15.86683 -15.62601 -15.28332 -15.06534 -14.98126 -14.34611 -14.08832 -13.93480 -13.47073 -12.83504 -12.49351 -12.20369 -12.05040 -11.90622 -11.37470 -10.81308 -10.64274 -10.55269 -9.57269 -9.33593 -8.63654 -6.50395 0.23620 0.38410 1.46347 1.53400 1.72398 2.17738 2.43208 2.84779 3.01414 3.38127 3.90885 4.12641 4.16836 4.26122 4.42257 4.42338 4.50854 4.71100 4.75037 4.97026 5.04755 5.45439 5.57356 5.75038 5.92415 6.26223 6.36297 6.52235 6.77634 6.89306 7.32222 8.55181 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.059824 B = 0.008019 C = 0.007871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.925876 B = 3491.071035 C = 3556.720364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.318 6.318 3 C 0.280 3.720 4 C -0.182 4.182 5 C -0.052 4.052 6 C -0.129 4.129 7 C 0.225 3.775 8 H 0.052 0.948 9 N -0.846 5.846 10 C -0.624 4.624 11 H 0.011 0.989 12 C -0.018 4.018 13 N -0.931 5.931 14 Si 1.090 2.910 15 H -0.292 1.292 16 H -0.262 1.262 17 H -0.237 1.237 18 C 0.129 3.871 19 N -0.550 5.550 20 H 0.053 0.947 21 H 0.047 0.953 22 H 0.128 0.872 23 H 0.166 0.834 24 H 0.157 0.843 25 H 0.333 0.667 26 H 0.329 0.671 27 H 0.251 0.749 28 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.409 -10.612 7.980 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.226 6.226 3 C 0.100 3.900 4 C -0.202 4.202 5 C -0.078 4.078 6 C -0.132 4.132 7 C 0.115 3.885 8 H 0.070 0.930 9 N -0.377 5.377 10 C -0.664 4.664 11 H 0.030 0.970 12 C -0.217 4.217 13 N -0.566 5.566 14 Si 0.910 3.090 15 H -0.218 1.218 16 H -0.187 1.187 17 H -0.162 1.162 18 C -0.026 4.026 19 N -0.273 5.273 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.146 0.854 23 H 0.183 0.817 24 H 0.175 0.825 25 H 0.148 0.852 26 H 0.141 0.859 27 H 0.060 0.940 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.084 -10.169 8.859 13.646 hybrid contribution -0.808 -0.396 -2.023 2.214 sum -2.892 -10.565 6.835 12.911 Atomic orbital electron populations 1.23010 0.76310 1.04553 1.01813 1.86181 1.24015 1.23945 1.88479 1.20081 0.90181 0.84875 0.94815 1.21251 0.91739 0.99824 1.07411 1.21573 1.01534 0.90531 0.94186 1.20909 0.94942 0.97006 1.00352 1.18041 0.93677 0.87010 0.89817 0.92980 1.59800 1.06698 1.15679 1.55551 1.22782 1.38488 1.09043 0.96042 0.97015 1.27345 0.98361 0.94751 1.01228 1.70990 1.38083 1.37894 1.09662 0.83465 0.75258 0.75941 0.74324 1.21805 1.18723 1.16171 1.22085 0.92917 0.93150 0.94481 1.67225 1.41401 0.98967 1.19744 0.92800 0.93400 0.85416 0.81658 0.82499 0.85206 0.85904 0.93952 0.83059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 10.38 113.37 1.18 2.06 15 2 O -0.32 -9.58 10.48 -89.97 -0.94 -10.52 15 3 C 0.28 9.72 7.49 84.79 0.63 10.36 15 4 C -0.18 -5.81 10.04 22.47 0.23 -5.58 15 5 C -0.05 -1.84 9.81 22.44 0.22 -1.62 15 6 C -0.13 -5.29 4.91 -19.77 -0.10 -5.39 15 7 C 0.23 10.01 2.50 43.42 0.11 10.12 15 8 H 0.05 2.26 6.74 -2.39 -0.02 2.24 15 9 N -0.85 -34.41 9.10 -174.96 -1.59 -36.00 15 10 C -0.62 -33.68 9.04 25.60 0.23 -33.45 15 11 H 0.01 0.71 7.99 -2.91 -0.02 0.69 15 12 C -0.02 -0.96 5.40 84.66 0.46 -0.51 15 13 N -0.93 -56.34 13.70 21.45 0.29 -56.05 15 14 Si 1.09 46.38 26.42 68.60 1.81 48.20 15 15 H -0.29 -12.81 7.11 99.48 0.71 -12.10 15 16 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 17 H -0.24 -8.73 5.63 99.48 0.56 -8.17 15 18 C 0.13 5.14 10.44 84.63 0.88 6.02 15 19 N -0.55 -20.80 9.22 -308.95 -2.85 -23.64 15 20 H 0.05 1.27 8.10 -2.38 -0.02 1.25 15 21 H 0.05 1.18 8.10 -2.39 -0.02 1.17 15 22 H 0.13 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.17 4.11 8.06 -2.91 -0.02 4.08 15 24 H 0.16 4.74 8.06 -2.91 -0.02 4.72 15 25 H 0.33 13.45 5.48 -89.69 -0.49 12.96 15 26 H 0.33 13.00 7.24 -89.70 -0.65 12.35 15 27 H 0.25 15.64 8.73 -92.71 -0.81 14.83 15 28 H 0.15 5.88 6.61 -2.91 -0.02 5.86 15 Total: -1.00 -64.27 242.02 0.43 -63.84 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.14 Total: 32.16 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 3.84 Total: -17.99 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -4.15 Total: -115.69 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.94 Total: -10.52 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.81 Total: 48.20 kcal Total: -64.27 0.43 -63.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095664991.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.874 kcal (2) G-P(sol) polarization free energy of solvation -64.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds