Wall clock time and date at job start Mon Mar 30 2020 02:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35668 * 117.00061 * 2 1 4 4 C 1.38924 * 119.68387 * 180.02562 * 3 2 1 5 5 C 1.38381 * 119.10905 * 179.97438 * 4 3 2 6 6 C 1.38825 * 118.48663 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.35223 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47161 * 20.00194 * 7 6 5 9 9 N 1.46902 * 109.46577 * 140.00056 * 7 6 5 10 10 C 1.50697 * 109.47178 * 259.99828 * 7 6 5 11 11 H 1.07998 * 120.00039 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99815 * 180.02562 * 10 7 6 13 13 N 1.31517 * 119.99524 * 180.02562 * 12 10 7 14 14 Si 1.86797 * 120.00201 * 359.97438 * 12 10 7 15 15 H 1.48501 * 109.46772 * 90.00170 * 14 12 10 16 16 H 1.48500 * 109.47211 * 210.00042 * 14 12 10 17 17 H 1.48496 * 109.47202 * 330.00564 * 14 12 10 18 18 C 1.38044 * 119.29172 * 0.25125 * 6 5 4 19 19 N 1.31967 * 120.83020 * 359.45534 * 18 6 5 20 20 H 1.09000 * 109.47271 * 59.99762 * 1 2 3 21 21 H 1.09007 * 109.47178 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47035 * 299.99606 * 1 2 3 23 23 H 1.07997 * 120.44530 * 0.02596 * 4 3 2 24 24 H 1.08004 * 120.75634 * 180.02562 * 5 4 3 25 25 H 1.00903 * 110.99827 * 60.00558 * 9 7 6 26 26 H 1.00905 * 110.99513 * 183.95166 * 9 7 6 27 27 H 0.97001 * 119.99599 * 180.02562 * 13 12 10 28 28 H 1.07997 * 119.58400 * 179.72543 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0485 2.5131 -0.0011 6 6 3.2505 3.6490 -0.0005 7 6 3.8769 5.0197 -0.0005 8 1 4.9060 4.9489 -0.3524 9 7 3.1150 5.9062 -0.8903 10 6 3.8618 5.5789 1.3988 11 1 3.4411 4.9995 2.2074 12 6 4.3851 6.8302 1.6469 13 7 4.3724 7.3179 2.8682 14 14 5.1133 7.8320 0.2485 15 1 4.0520 8.6702 -0.3649 16 1 6.1919 8.7063 0.7754 17 1 5.6749 6.9160 -0.7765 18 6 1.8771 3.5096 0.0058 19 7 1.3186 2.3140 0.0006 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.0228 0.3694 -0.0014 24 1 5.1254 2.5946 -0.0019 25 1 2.1568 5.9884 -0.5849 26 1 3.5520 6.8132 -0.9578 27 1 4.7402 8.1984 3.0426 28 1 1.2518 4.3902 0.0108 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095682624.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:28 Heat of formation + Delta-G solvation = 2.041560 kcal Electronic energy + Delta-G solvation = -13262.849111 eV Core-core repulsion = 10893.414576 eV Total energy + Delta-G solvation = -2369.434534 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.12230 -37.72874 -35.01688 -32.09015 -31.78912 -29.62727 -27.02740 -26.11818 -23.45144 -22.63274 -20.36293 -17.99800 -17.26236 -16.48106 -15.66517 -15.48316 -14.48424 -14.28756 -13.97955 -13.72147 -12.98929 -12.81180 -12.54522 -11.98372 -11.80494 -11.65200 -10.98962 -10.87520 -10.58167 -10.37193 -9.68662 -9.32324 -9.03521 -8.83155 -7.97637 -7.48232 -6.29061 -4.33769 1.71649 1.88891 3.09189 3.23393 3.24202 3.44694 4.17595 4.35611 4.82297 4.99689 5.36724 5.42643 5.47746 5.56618 5.65845 5.67884 5.83876 6.04976 6.16664 6.51524 6.62332 6.92983 7.18396 7.39131 7.63805 7.96793 8.18360 8.37853 8.41738 8.77625 9.29272 10.83387 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.061478 B = 0.007944 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.335078 B = 3523.933046 C = 3547.192104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.317 6.317 3 C 0.288 3.712 4 C -0.189 4.189 5 C -0.048 4.048 6 C -0.101 4.101 7 C 0.215 3.785 8 H 0.052 0.948 9 N -0.849 5.849 10 C -0.549 4.549 11 H 0.076 0.924 12 C 0.074 3.926 13 N -0.887 5.887 14 Si 0.874 3.126 15 H -0.274 1.274 16 H -0.290 1.290 17 H -0.258 1.258 18 C 0.143 3.857 19 N -0.541 5.541 20 H 0.054 0.946 21 H 0.088 0.912 22 H 0.055 0.945 23 H 0.132 0.868 24 H 0.137 0.863 25 H 0.331 0.669 26 H 0.319 0.681 27 H 0.267 0.733 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 -8.768 -6.340 11.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.225 6.225 3 C 0.109 3.891 4 C -0.210 4.210 5 C -0.074 4.074 6 C -0.104 4.104 7 C 0.105 3.895 8 H 0.070 0.930 9 N -0.383 5.383 10 C -0.589 4.589 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.524 5.524 14 Si 0.702 3.298 15 H -0.201 1.201 16 H -0.217 1.217 17 H -0.183 1.183 18 C -0.012 4.012 19 N -0.264 5.264 20 H 0.073 0.927 21 H 0.107 0.893 22 H 0.074 0.926 23 H 0.150 0.850 24 H 0.155 0.845 25 H 0.143 0.857 26 H 0.135 0.865 27 H 0.077 0.923 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.139 -9.489 -6.795 12.383 hybrid contribution 0.939 1.486 0.403 1.804 sum -3.201 -8.003 -6.392 10.731 Atomic orbital electron populations 1.22726 0.78153 1.02052 1.02263 1.86166 1.22205 1.25240 1.88881 1.19702 0.89365 0.84538 0.95464 1.20905 0.91823 0.99079 1.09193 1.21279 1.00526 0.90725 0.94867 1.20852 0.94360 0.96836 0.98355 1.18369 0.93260 0.86056 0.91806 0.93025 1.59736 1.06570 1.16015 1.55974 1.21627 1.41340 1.02278 0.93616 0.90602 1.25040 0.94752 0.97573 0.95638 1.69896 1.44828 1.18069 1.19618 0.86996 0.79525 0.80690 0.82562 1.20050 1.21701 1.18321 1.22094 0.92891 0.92699 0.93507 1.67240 1.41011 0.98880 1.19247 0.92685 0.89342 0.92617 0.84962 0.84516 0.85690 0.86471 0.92279 0.82780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 101.05 1.05 1.60 15 2 O -0.32 -5.10 10.48 -18.70 -0.20 -5.30 15 3 C 0.29 5.21 7.49 -17.12 -0.13 5.08 15 4 C -0.19 -3.22 10.04 -39.27 -0.39 -3.61 15 5 C -0.05 -0.87 9.81 -39.31 -0.39 -1.26 15 6 C -0.10 -2.08 4.91 -104.47 -0.51 -2.59 15 7 C 0.21 4.86 2.49 -70.01 -0.17 4.69 15 8 H 0.05 1.19 7.09 -51.93 -0.37 0.82 15 9 N -0.85 -17.89 8.98 -6.65 -0.06 -17.95 15 10 C -0.55 -14.64 9.29 -34.44 -0.32 -14.96 15 11 H 0.08 2.25 7.98 -52.49 -0.42 1.84 15 12 C 0.07 2.02 5.47 -17.82 -0.10 1.93 15 13 N -0.89 -26.00 13.96 55.43 0.77 -25.23 15 14 Si 0.87 20.18 24.61 -169.99 -4.18 16.00 15 15 H -0.27 -6.07 7.01 56.52 0.40 -5.68 15 16 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 17 H -0.26 -5.77 6.54 56.52 0.37 -5.40 15 18 C 0.14 2.83 10.45 -17.56 -0.18 2.64 15 19 N -0.54 -10.30 9.22 -13.33 -0.12 -10.42 15 20 H 0.05 0.69 8.10 -51.93 -0.42 0.27 15 21 H 0.09 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.06 0.72 8.10 -51.93 -0.42 0.30 15 23 H 0.13 1.87 8.06 -52.49 -0.42 1.45 15 24 H 0.14 2.21 8.06 -52.48 -0.42 1.78 15 25 H 0.33 6.55 7.37 -39.29 -0.29 6.26 15 26 H 0.32 6.85 4.30 -39.29 -0.17 6.68 15 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 28 H 0.16 2.87 6.68 -52.49 -0.35 2.52 15 LS Contribution 240.42 15.07 3.62 3.62 Total: -1.00 -29.73 240.42 -4.19 -33.92 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -2.88 Total: 11.84 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -1.15 Total: -6.50 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.59 Total: -53.59 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -0.20 Total: -5.30 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.18 Total: 16.00 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.73 -4.19 -33.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095682624.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.958 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds