Wall clock time and date at job start Mon Mar 30 2020 02:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35668 * 117.00061 * 2 1 4 4 C 1.38924 * 119.68387 * 180.02562 * 3 2 1 5 5 C 1.38381 * 119.10905 * 179.97438 * 4 3 2 6 6 C 1.38825 * 118.48663 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.35223 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47161 * 20.00194 * 7 6 5 9 9 N 1.46902 * 109.46577 * 140.00056 * 7 6 5 10 10 C 1.50697 * 109.47178 * 259.99828 * 7 6 5 11 11 H 1.07998 * 120.00039 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99815 * 180.02562 * 10 7 6 13 13 N 1.31517 * 119.99524 * 180.02562 * 12 10 7 14 14 Si 1.86797 * 120.00201 * 359.97438 * 12 10 7 15 15 H 1.48501 * 109.46772 * 90.00170 * 14 12 10 16 16 H 1.48500 * 109.47211 * 210.00042 * 14 12 10 17 17 H 1.48496 * 109.47202 * 330.00564 * 14 12 10 18 18 C 1.38044 * 119.29172 * 0.25125 * 6 5 4 19 19 N 1.31967 * 120.83020 * 359.45534 * 18 6 5 20 20 H 1.09000 * 109.47271 * 59.99762 * 1 2 3 21 21 H 1.09007 * 109.47178 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47035 * 299.99606 * 1 2 3 23 23 H 1.07997 * 120.44530 * 0.02596 * 4 3 2 24 24 H 1.08004 * 120.75634 * 180.02562 * 5 4 3 25 25 H 1.00903 * 110.99827 * 60.00558 * 9 7 6 26 26 H 1.00905 * 110.99513 * 183.95166 * 9 7 6 27 27 H 0.97001 * 119.99599 * 180.02562 * 13 12 10 28 28 H 1.07997 * 119.58400 * 179.72543 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4326 1.2738 -0.0005 5 6 4.0485 2.5131 -0.0011 6 6 3.2505 3.6490 -0.0005 7 6 3.8769 5.0197 -0.0005 8 1 4.9060 4.9489 -0.3524 9 7 3.1150 5.9062 -0.8903 10 6 3.8618 5.5789 1.3988 11 1 3.4411 4.9995 2.2074 12 6 4.3851 6.8302 1.6469 13 7 4.3724 7.3179 2.8682 14 14 5.1133 7.8320 0.2485 15 1 4.0520 8.6702 -0.3649 16 1 6.1919 8.7063 0.7754 17 1 5.6749 6.9160 -0.7765 18 6 1.8771 3.5096 0.0058 19 7 1.3186 2.3140 0.0006 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 4.0228 0.3694 -0.0014 24 1 5.1254 2.5946 -0.0019 25 1 2.1568 5.9884 -0.5849 26 1 3.5520 6.8132 -0.9578 27 1 4.7402 8.1984 3.0426 28 1 1.2518 4.3902 0.0108 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095682624.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:27 Heat of formation + Delta-G solvation = -21.989528 kcal Electronic energy + Delta-G solvation = -13263.891177 eV Core-core repulsion = 10893.414576 eV Total energy + Delta-G solvation = -2370.476601 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.52213 -39.08717 -36.74682 -34.02763 -33.29970 -31.09208 -28.35611 -27.87146 -25.09609 -24.04733 -22.02684 -19.31054 -19.17424 -18.06491 -17.22342 -16.89008 -16.20562 -15.82942 -15.43798 -15.08593 -14.64214 -14.40443 -14.02922 -13.64840 -13.54032 -12.81024 -12.77817 -12.48954 -12.08457 -11.96150 -11.64393 -10.91367 -10.74619 -10.50639 -9.58760 -9.11940 -8.38861 -6.48582 0.28754 0.42281 1.27568 1.35785 1.44835 2.21798 2.22936 2.87419 2.95902 3.43449 3.85216 4.15624 4.21129 4.26170 4.42838 4.46464 4.54024 4.74442 4.78784 4.98407 5.08396 5.34619 5.55140 5.61376 6.01463 6.30057 6.38093 6.55530 6.68407 6.92951 7.18740 8.77255 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.061478 B = 0.007944 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.335078 B = 3523.933046 C = 3547.192104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.319 6.319 3 C 0.282 3.718 4 C -0.183 4.183 5 C -0.050 4.050 6 C -0.129 4.129 7 C 0.224 3.776 8 H 0.052 0.948 9 N -0.839 5.839 10 C -0.549 4.549 11 H 0.029 0.971 12 C 0.018 3.982 13 N -0.938 5.938 14 Si 0.940 3.060 15 H -0.255 1.255 16 H -0.294 1.294 17 H -0.242 1.242 18 C 0.134 3.866 19 N -0.550 5.550 20 H 0.054 0.946 21 H 0.127 0.873 22 H 0.048 0.952 23 H 0.165 0.835 24 H 0.157 0.843 25 H 0.338 0.662 26 H 0.319 0.681 27 H 0.269 0.731 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.335 -9.737 -8.069 13.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.227 6.227 3 C 0.103 3.897 4 C -0.204 4.204 5 C -0.075 4.075 6 C -0.132 4.132 7 C 0.114 3.886 8 H 0.070 0.930 9 N -0.372 5.372 10 C -0.589 4.589 11 H 0.048 0.952 12 C -0.181 4.181 13 N -0.577 5.577 14 Si 0.765 3.235 15 H -0.181 1.181 16 H -0.221 1.221 17 H -0.166 1.166 18 C -0.021 4.021 19 N -0.273 5.273 20 H 0.072 0.928 21 H 0.145 0.855 22 H 0.067 0.933 23 H 0.183 0.817 24 H 0.174 0.826 25 H 0.150 0.850 26 H 0.135 0.865 27 H 0.078 0.922 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.940 -10.481 -8.542 14.084 hybrid contribution 0.772 1.629 1.008 2.066 sum -3.168 -8.852 -7.534 12.048 Atomic orbital electron populations 1.23010 0.76310 1.04510 1.01870 1.86177 1.24021 1.24011 1.88444 1.20080 0.90162 0.84892 0.94608 1.21231 0.91750 0.99785 1.07599 1.21557 1.01506 0.90524 0.93950 1.20788 0.94993 0.96527 1.00898 1.18165 0.93789 0.87371 0.89308 0.92981 1.59692 1.06821 1.15732 1.54995 1.21827 1.40354 1.01989 0.94684 0.95236 1.25913 0.95166 0.98851 0.98191 1.70054 1.46645 1.18795 1.22236 0.85921 0.78953 0.79202 0.79422 1.18062 1.22137 1.16578 1.22128 0.92838 0.93244 0.93905 1.67246 1.41333 0.98951 1.19815 0.92770 0.85519 0.93309 0.81744 0.82565 0.84953 0.86544 0.92195 0.82668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.87 10.38 113.37 1.18 2.05 15 2 O -0.32 -9.50 10.48 -89.84 -0.94 -10.44 15 3 C 0.28 9.68 7.49 84.80 0.63 10.32 15 4 C -0.18 -5.80 10.04 22.47 0.23 -5.57 15 5 C -0.05 -1.72 9.81 22.44 0.22 -1.50 15 6 C -0.13 -5.22 4.91 -19.77 -0.10 -5.32 15 7 C 0.22 9.97 2.49 43.42 0.11 10.08 15 8 H 0.05 2.32 7.09 -2.39 -0.02 2.30 15 9 N -0.84 -34.02 8.98 -174.95 -1.57 -35.59 15 10 C -0.55 -29.77 9.29 25.60 0.24 -29.53 15 11 H 0.03 1.83 7.98 -2.91 -0.02 1.80 15 12 C 0.02 1.00 5.47 84.65 0.46 1.47 15 13 N -0.94 -56.32 13.96 21.45 0.30 -56.02 15 14 Si 0.94 41.08 24.61 68.60 1.69 42.77 15 15 H -0.26 -10.35 7.01 99.48 0.70 -9.65 15 16 H -0.29 -13.01 7.11 99.48 0.71 -12.30 15 17 H -0.24 -9.87 6.54 99.48 0.65 -9.22 15 18 C 0.13 5.24 10.45 84.63 0.88 6.12 15 19 N -0.55 -20.45 9.22 -308.96 -2.85 -23.30 15 20 H 0.05 1.26 8.10 -2.39 -0.02 1.24 15 21 H 0.13 1.93 8.14 -2.38 -0.02 1.91 15 22 H 0.05 1.19 8.10 -2.39 -0.02 1.17 15 23 H 0.17 4.06 8.06 -2.91 -0.02 4.04 15 24 H 0.16 4.70 8.06 -2.91 -0.02 4.67 15 25 H 0.34 13.04 7.37 -89.69 -0.66 12.38 15 26 H 0.32 12.90 4.30 -89.69 -0.39 12.51 15 27 H 0.27 15.08 8.31 -92.71 -0.77 14.31 15 28 H 0.16 5.82 6.68 -2.91 -0.02 5.80 15 Total: -1.00 -64.08 240.42 0.56 -63.52 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.07 Total: 30.95 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 3.85 Total: -11.90 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -4.12 Total: -114.90 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.94 Total: -10.44 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.69 Total: 42.77 kcal Total: -64.08 0.56 -63.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095682624.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.532 kcal (2) G-P(sol) polarization free energy of solvation -64.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds