Wall clock time and date at job start Mon Mar 30 2020 02:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35681 * 117.00374 * 2 1 4 4 C 1.38919 * 119.68446 * 179.97438 * 3 2 1 5 5 C 1.38378 * 119.10881 * 180.02562 * 4 3 2 6 6 C 1.38829 * 118.48630 * 0.02562 * 5 4 3 7 7 C 1.38043 * 119.28907 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.58299 * 179.97438 * 7 6 5 9 9 H 1.09009 * 109.47290 * 5.00137 * 8 7 6 10 10 N 1.46902 * 109.47231 * 245.00349 * 8 7 6 11 11 C 1.50702 * 109.47465 * 124.99765 * 8 7 6 12 12 H 1.08002 * 119.99441 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00075 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00481 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99886 * 179.73007 * 13 11 8 16 16 H 1.48494 * 109.47225 * 180.27306 * 15 13 11 17 17 H 1.48506 * 109.46866 * 300.27330 * 15 13 11 18 18 H 1.48498 * 109.47306 * 60.26614 * 15 13 11 19 19 N 1.31961 * 120.83534 * 0.27271 * 7 6 5 20 20 H 1.09002 * 109.47085 * 300.00371 * 1 2 3 21 21 H 1.09002 * 109.47169 * 59.99827 * 1 2 3 22 22 H 1.08992 * 109.47745 * 179.97438 * 1 2 3 23 23 H 1.08000 * 120.44718 * 0.02562 * 4 3 2 24 24 H 1.08003 * 120.75648 * 179.97438 * 5 4 3 25 25 H 1.07998 * 120.35564 * 179.97438 * 6 5 4 26 26 H 1.00902 * 110.99590 * 299.99265 * 10 8 7 27 27 H 1.00896 * 111.00313 * 63.95111 * 10 8 7 28 28 H 0.97005 * 119.99656 * 359.72741 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0485 2.5130 0.0011 6 6 3.2505 3.6491 0.0016 7 6 1.8772 3.5096 0.0010 8 6 1.0046 4.7383 0.0022 9 1 1.6290 5.6275 -0.0862 10 7 0.2436 4.7973 1.2573 11 6 0.0497 4.6775 -1.1621 12 1 0.0721 3.8332 -1.8352 13 6 -0.8525 5.6995 -1.3678 14 7 -0.8802 6.7274 -0.5478 15 14 -2.0311 5.6277 -2.8153 16 1 -2.8868 6.8413 -2.8176 17 1 -1.2571 5.5653 -4.0812 18 1 -2.8861 4.4192 -2.6980 19 7 1.3187 2.3141 0.0054 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0275 -0.0005 23 1 4.0229 0.3694 0.0005 24 1 5.1255 2.5945 0.0019 25 1 3.6994 4.6313 0.0024 26 1 -0.3436 3.9835 1.3626 27 1 0.8597 4.9037 2.0492 28 1 -0.2684 6.7645 0.2041 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104521189.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:29 Heat of formation + Delta-G solvation = -5.118603 kcal Electronic energy + Delta-G solvation = -13479.210587 eV Core-core repulsion = 11109.465564 eV Total energy + Delta-G solvation = -2369.745022 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.14677 -37.66498 -34.75931 -31.93671 -31.17231 -29.70342 -27.03838 -25.61580 -23.22507 -22.44606 -20.74602 -17.77360 -17.04578 -15.90940 -15.60145 -15.56312 -14.59602 -14.06186 -13.77107 -13.54979 -13.18185 -12.83337 -12.11393 -11.96334 -11.50458 -11.33293 -10.78045 -10.70920 -10.41997 -10.02433 -9.43484 -9.11292 -8.67467 -8.29014 -7.94598 -7.46791 -6.15294 -3.95984 1.66985 1.75378 3.45388 3.50108 3.52054 3.70627 4.29590 4.63588 4.83608 5.23222 5.44782 5.48188 5.53252 5.60591 5.64413 5.72373 5.97687 6.09019 6.22831 6.41502 6.62067 6.85861 7.06248 7.64030 7.96146 8.29847 8.52487 8.67292 8.79566 9.08512 9.84719 11.24897 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032895 B = 0.010651 C = 0.009205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.984716 B = 2628.207863 C = 3041.076615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.317 6.317 3 C 0.310 3.690 4 C -0.218 4.218 5 C -0.047 4.047 6 C -0.220 4.220 7 C 0.177 3.823 8 C 0.249 3.751 9 H 0.046 0.954 10 N -0.822 5.822 11 C -0.596 4.596 12 H 0.047 0.953 13 C 0.037 3.963 14 N -0.893 5.893 15 Si 1.065 2.935 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.290 1.290 19 N -0.516 5.516 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.088 0.912 23 H 0.130 0.870 24 H 0.132 0.868 25 H 0.130 0.870 26 H 0.334 0.666 27 H 0.299 0.701 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 -9.327 1.847 11.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.225 6.225 3 C 0.130 3.870 4 C -0.239 4.239 5 C -0.073 4.073 6 C -0.240 4.240 7 C 0.038 3.962 8 C 0.139 3.861 9 H 0.063 0.937 10 N -0.348 5.348 11 C -0.635 4.635 12 H 0.066 0.934 13 C -0.173 4.173 14 N -0.527 5.527 15 Si 0.894 3.106 16 H -0.209 1.209 17 H -0.218 1.218 18 H -0.217 1.217 19 N -0.239 5.239 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.107 0.893 23 H 0.148 0.852 24 H 0.150 0.850 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.109 0.891 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.029 -8.155 0.812 9.132 hybrid contribution 2.509 -1.736 0.955 3.197 sum 6.538 -9.891 1.767 11.988 Atomic orbital electron populations 1.22783 0.77481 1.02011 1.03050 1.86153 1.22807 1.25215 1.88320 1.19980 0.89271 0.85207 0.92494 1.20836 0.92074 0.98999 1.11941 1.21285 0.99832 0.91576 0.94588 1.21959 0.94928 0.99385 1.07777 1.22897 0.92426 0.93925 0.86958 1.18451 0.91008 0.86254 0.90349 0.93674 1.59524 1.24898 1.47284 1.03125 1.21598 1.21845 1.09137 1.10910 0.93431 1.25607 0.97774 0.92533 1.01354 1.70566 1.37446 1.29608 1.15102 0.83631 0.76115 0.75824 0.75027 1.20898 1.21776 1.21687 1.67278 1.40243 0.98148 1.18228 0.92406 0.91994 0.89324 0.85208 0.85026 0.85191 0.85352 0.89112 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 101.05 1.05 1.69 15 2 O -0.32 -5.56 10.48 -18.74 -0.20 -5.75 15 3 C 0.31 5.95 7.49 -17.12 -0.13 5.82 15 4 C -0.22 -3.59 10.04 -39.28 -0.39 -3.98 15 5 C -0.05 -0.74 10.17 -39.31 -0.40 -1.14 15 6 C -0.22 -4.05 9.70 -39.43 -0.38 -4.44 15 7 C 0.18 3.88 5.67 -82.61 -0.47 3.41 15 8 C 0.25 6.17 2.54 -70.02 -0.18 5.99 15 9 H 0.05 1.17 7.73 -51.92 -0.40 0.77 15 10 N -0.82 -19.21 7.78 -6.65 -0.05 -19.26 15 11 C -0.60 -16.78 8.53 -34.44 -0.29 -17.08 15 12 H 0.05 1.39 7.69 -52.49 -0.40 0.99 15 13 C 0.04 1.05 5.39 -17.82 -0.10 0.95 15 14 N -0.89 -26.90 13.51 55.43 0.75 -26.15 15 15 Si 1.06 25.61 29.90 -169.99 -5.08 20.53 15 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 17 H -0.29 -6.74 7.11 56.52 0.40 -6.33 15 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 19 N -0.52 -11.16 8.76 -9.55 -0.08 -11.24 15 20 H 0.06 0.90 8.10 -51.93 -0.42 0.48 15 21 H 0.06 1.03 8.11 -51.93 -0.42 0.61 15 22 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 23 H 0.13 1.77 8.06 -52.49 -0.42 1.35 15 24 H 0.13 1.54 8.06 -52.48 -0.42 1.12 15 25 H 0.13 2.17 7.94 -52.49 -0.42 1.75 15 26 H 0.33 7.88 8.92 -39.29 -0.35 7.53 15 27 H 0.30 6.13 9.06 -39.29 -0.36 5.77 15 28 H 0.29 8.64 6.39 -40.82 -0.26 8.38 15 LS Contribution 249.85 15.07 3.77 3.77 Total: -1.00 -31.34 249.85 -5.29 -36.63 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -3.09 Total: 10.25 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.29 Total: -8.77 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: 0.61 Total: -56.65 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.20 Total: -5.75 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.34 -5.29 -36.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104521189.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.512 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds