Wall clock time and date at job start Mon Mar 30 2020 02:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35681 * 116.99918 * 2 1 4 4 N 1.32273 * 119.68254 * 359.97438 * 3 2 1 5 5 C 1.31934 * 121.64673 * 179.97438 * 4 3 2 6 6 C 1.38096 * 120.83446 * 0.02562 * 5 4 3 7 7 C 1.38780 * 119.28189 * 359.97438 * 6 5 4 8 8 C 1.38420 * 118.48942 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.44159 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47196 * 144.97680 * 9 8 7 11 11 N 1.46898 * 109.47231 * 24.97943 * 9 8 7 12 12 C 1.50694 * 109.47535 * 264.97891 * 9 8 7 13 13 H 1.08004 * 119.99975 * 359.97438 * 12 9 8 14 14 C 1.37874 * 120.00500 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99864 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00408 * 179.97438 * 14 12 9 17 17 H 1.48495 * 109.47204 * 59.99496 * 16 14 12 18 18 H 1.48497 * 109.47575 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46942 * 299.99541 * 16 14 12 20 20 H 1.08998 * 109.47028 * 59.99985 * 1 2 3 21 21 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.46814 * 300.00175 * 1 2 3 23 23 H 1.08007 * 119.58383 * 179.72291 * 5 4 3 24 24 H 1.07997 * 120.35454 * 179.97438 * 6 5 4 25 25 H 1.08008 * 120.75147 * 180.02562 * 7 6 5 26 26 H 1.00903 * 110.99871 * 176.04095 * 11 9 8 27 27 H 1.00901 * 111.00197 * 299.99861 * 11 9 8 28 28 H 0.97003 * 120.00182 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3184 2.3143 -0.0005 5 6 1.8768 3.5096 0.0000 6 6 3.2506 3.6492 0.0005 7 6 4.0483 2.5135 0.0011 8 6 3.4322 1.2740 0.0005 9 6 4.2558 0.0119 0.0017 10 1 3.7489 -0.7522 0.5911 11 7 5.5741 0.2881 0.5881 12 6 4.4279 -0.4770 -1.4133 13 1 3.9848 0.0711 -2.2317 14 6 5.1501 -1.6245 -1.6632 15 7 5.6893 -2.2922 -0.6667 16 14 5.3629 -2.2309 -3.4171 17 1 6.0535 -1.1903 -4.2204 18 1 6.1745 -3.4745 -3.4160 19 1 4.0300 -2.5099 -4.0095 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.2514 4.3902 -0.0050 24 1 3.6994 4.6315 0.0005 25 1 5.1253 2.5950 0.0019 26 1 6.1221 -0.5562 0.6595 27 1 6.0644 0.9939 0.0593 28 1 6.1977 -3.0994 -0.8425 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104521680.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:30 Heat of formation + Delta-G solvation = -3.887641 kcal Electronic energy + Delta-G solvation = -13584.584605 eV Core-core repulsion = 11214.892961 eV Total energy + Delta-G solvation = -2369.691644 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.96461 -37.17350 -35.03203 -32.01866 -30.67654 -29.49331 -26.65528 -26.03334 -23.50555 -22.17796 -20.24129 -17.74565 -16.54416 -16.44849 -15.28465 -15.22406 -14.56473 -14.02561 -13.55096 -13.11364 -12.95305 -12.53160 -12.22519 -11.78629 -11.40414 -11.13545 -10.92337 -10.69593 -10.63448 -10.11624 -9.79313 -9.01906 -8.94148 -8.60119 -7.68247 -7.19385 -6.06320 -4.21624 1.88246 1.98840 3.25644 3.30383 3.34020 3.81135 4.32305 4.51656 4.89555 5.16177 5.47954 5.65245 5.68980 5.73164 5.85227 5.92172 6.05779 6.36026 6.52065 6.80094 6.94788 7.17133 7.66555 7.76179 7.97268 8.09778 8.48090 8.67777 8.92431 9.09886 9.48357 10.92008 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.011281 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.516643 B = 2481.425439 C = 2826.722965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.289 6.289 3 C 0.311 3.689 4 N -0.548 5.548 5 C 0.100 3.900 6 C -0.214 4.214 7 C -0.047 4.047 8 C -0.090 4.090 9 C 0.251 3.749 10 H 0.057 0.943 11 N -0.851 5.851 12 C -0.535 4.535 13 H 0.052 0.948 14 C 0.067 3.933 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.276 1.276 20 H 0.051 0.949 21 H 0.089 0.911 22 H 0.050 0.950 23 H 0.146 0.854 24 H 0.125 0.875 25 H 0.137 0.863 26 H 0.358 0.642 27 H 0.309 0.691 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 7.236 0.816 8.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.195 6.195 3 C 0.131 3.869 4 N -0.272 5.272 5 C -0.054 4.054 6 C -0.234 4.234 7 C -0.072 4.072 8 C -0.093 4.093 9 C 0.141 3.859 10 H 0.074 0.926 11 N -0.381 5.381 12 C -0.575 4.575 13 H 0.070 0.930 14 C -0.135 4.135 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.202 1.202 20 H 0.070 0.930 21 H 0.107 0.893 22 H 0.069 0.931 23 H 0.163 0.837 24 H 0.143 0.857 25 H 0.155 0.845 26 H 0.174 0.826 27 H 0.119 0.881 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.194 6.924 1.524 9.414 hybrid contribution 1.075 -0.496 -1.987 2.313 sum -5.120 6.428 -0.464 8.231 Atomic orbital electron populations 1.22722 0.79086 1.02162 1.01417 1.86428 1.21105 1.24272 1.87661 1.19693 0.89253 0.84171 0.93745 1.67182 1.41151 0.98878 1.19987 1.22040 0.92744 0.93329 0.97329 1.21855 0.94949 0.99298 1.07320 1.21222 1.00590 0.90654 0.94767 1.20589 0.91076 0.98413 0.99271 1.17781 0.86847 0.87453 0.93855 0.92556 1.59579 1.07046 1.15873 1.55647 1.21671 1.33317 1.09608 0.92930 0.92995 1.24981 0.95311 0.95833 0.97403 1.69728 1.35073 1.17885 1.30667 0.86571 0.78240 0.78061 0.84630 1.20293 1.21144 1.20175 0.93047 0.89291 0.93148 0.83665 0.85692 0.84521 0.82590 0.88109 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.38 101.05 1.05 1.74 15 2 O -0.29 -6.33 9.63 -18.75 -0.18 -6.51 15 3 C 0.31 6.85 7.47 -17.13 -0.13 6.72 15 4 N -0.55 -10.71 9.22 -13.33 -0.12 -10.83 15 5 C 0.10 1.67 11.18 -17.56 -0.20 1.47 15 6 C -0.21 -3.49 10.11 -39.43 -0.40 -3.89 15 7 C -0.05 -0.91 9.37 -39.31 -0.37 -1.28 15 8 C -0.09 -2.05 5.02 -104.32 -0.52 -2.58 15 9 C 0.25 6.43 2.68 -70.02 -0.19 6.25 15 10 H 0.06 1.62 7.71 -51.92 -0.40 1.22 15 11 N -0.85 -20.26 8.80 -6.65 -0.06 -20.32 15 12 C -0.54 -14.71 8.71 -34.44 -0.30 -15.01 15 13 H 0.05 1.46 7.74 -52.48 -0.41 1.05 15 14 C 0.07 1.83 5.38 -17.82 -0.10 1.73 15 15 N -0.89 -24.85 11.54 55.43 0.64 -24.21 15 16 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 15 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 20 H 0.05 0.81 8.10 -51.93 -0.42 0.39 15 21 H 0.09 1.22 8.14 -51.93 -0.42 0.80 15 22 H 0.05 0.77 8.10 -51.93 -0.42 0.35 15 23 H 0.15 1.85 8.06 -52.48 -0.42 1.43 15 24 H 0.13 1.59 8.06 -52.49 -0.42 1.17 15 25 H 0.14 2.47 6.41 -52.48 -0.34 2.13 15 26 H 0.36 9.11 7.08 -39.29 -0.28 8.83 15 27 H 0.31 6.85 7.27 -39.29 -0.29 6.56 15 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 LS Contribution 245.32 15.07 3.70 3.70 Total: -1.00 -29.53 245.32 -5.15 -34.68 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -2.95 Total: 12.11 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.15 Total: -4.85 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.46 Total: -55.37 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.18 Total: -6.51 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.53 -5.15 -34.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104521680.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.790 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds