Wall clock time and date at job start Mon Mar 30 2020 02:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35681 * 116.99918 * 2 1 4 4 N 1.32273 * 119.68254 * 359.97438 * 3 2 1 5 5 C 1.31934 * 121.64673 * 179.97438 * 4 3 2 6 6 C 1.38096 * 120.83446 * 0.02562 * 5 4 3 7 7 C 1.38780 * 119.28189 * 359.97438 * 6 5 4 8 8 C 1.38420 * 118.48942 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.44159 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47196 * 144.97680 * 9 8 7 11 11 N 1.46898 * 109.47231 * 24.97943 * 9 8 7 12 12 C 1.50694 * 109.47535 * 264.97891 * 9 8 7 13 13 H 1.08004 * 119.99975 * 359.97438 * 12 9 8 14 14 C 1.37874 * 120.00500 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99864 * 359.97438 * 14 12 9 16 16 Si 1.86797 * 120.00408 * 179.97438 * 14 12 9 17 17 H 1.48495 * 109.47204 * 59.99496 * 16 14 12 18 18 H 1.48497 * 109.47575 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46942 * 299.99541 * 16 14 12 20 20 H 1.08998 * 109.47028 * 59.99985 * 1 2 3 21 21 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.46814 * 300.00175 * 1 2 3 23 23 H 1.08007 * 119.58383 * 179.72291 * 5 4 3 24 24 H 1.07997 * 120.35454 * 179.97438 * 6 5 4 25 25 H 1.08008 * 120.75147 * 180.02562 * 7 6 5 26 26 H 1.00903 * 110.99871 * 176.04095 * 11 9 8 27 27 H 1.00901 * 111.00197 * 299.99861 * 11 9 8 28 28 H 0.97003 * 120.00182 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3184 2.3143 -0.0005 5 6 1.8768 3.5096 0.0000 6 6 3.2506 3.6492 0.0005 7 6 4.0483 2.5135 0.0011 8 6 3.4322 1.2740 0.0005 9 6 4.2558 0.0119 0.0017 10 1 3.7489 -0.7522 0.5911 11 7 5.5741 0.2881 0.5881 12 6 4.4279 -0.4770 -1.4133 13 1 3.9848 0.0711 -2.2317 14 6 5.1501 -1.6245 -1.6632 15 7 5.6893 -2.2922 -0.6667 16 14 5.3629 -2.2309 -3.4171 17 1 6.0535 -1.1903 -4.2204 18 1 6.1745 -3.4745 -3.4160 19 1 4.0300 -2.5099 -4.0095 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.2514 4.3902 -0.0050 24 1 3.6994 4.6315 0.0005 25 1 5.1253 2.5950 0.0019 26 1 6.1221 -0.5562 0.6595 27 1 6.0644 0.9939 0.0593 28 1 6.1977 -3.0994 -0.8425 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104521680.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:30 Heat of formation + Delta-G solvation = -26.881556 kcal Electronic energy + Delta-G solvation = -13585.581696 eV Core-core repulsion = 11214.892961 eV Total energy + Delta-G solvation = -2370.688735 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.45961 -38.67410 -36.90484 -33.90880 -32.24500 -31.13051 -28.02885 -28.01503 -25.23003 -23.65369 -21.99480 -19.23327 -18.62066 -17.99391 -16.94491 -16.77410 -16.26263 -15.66937 -14.98898 -14.88768 -14.52616 -14.14023 -13.99740 -13.31903 -13.18038 -12.81938 -12.75906 -12.52819 -12.06082 -12.02570 -11.65462 -10.76453 -10.46331 -10.44128 -9.33762 -9.06953 -8.11195 -6.36532 0.42637 0.50107 1.36665 1.37942 1.46263 2.36286 2.39321 3.01555 3.05405 3.53217 4.15724 4.19561 4.34877 4.45847 4.46940 4.57960 4.68143 4.74682 4.89374 5.20170 5.43400 5.62263 5.69582 5.75244 6.04473 6.50517 6.63667 6.88810 7.02003 7.11755 7.38361 8.83344 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.011281 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.516643 B = 2481.425439 C = 2826.722965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.324 6.324 3 C 0.289 3.711 4 N -0.553 5.553 5 C 0.106 3.894 6 C -0.199 4.199 7 C -0.050 4.050 8 C -0.134 4.134 9 C 0.260 3.740 10 H 0.009 0.991 11 N -0.841 5.841 12 C -0.550 4.550 13 H 0.038 0.962 14 C 0.023 3.977 15 N -0.916 5.916 16 Si 0.958 3.042 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.279 1.279 20 H 0.055 0.945 21 H 0.110 0.890 22 H 0.059 0.941 23 H 0.194 0.806 24 H 0.172 0.828 25 H 0.145 0.855 26 H 0.347 0.653 27 H 0.320 0.680 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 9.229 0.126 10.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.111 3.889 4 N -0.277 5.277 5 C -0.049 4.049 6 C -0.219 4.219 7 C -0.075 4.075 8 C -0.137 4.137 9 C 0.149 3.851 10 H 0.027 0.973 11 N -0.370 5.370 12 C -0.590 4.590 13 H 0.057 0.943 14 C -0.177 4.177 15 N -0.555 5.555 16 Si 0.783 3.217 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.205 1.205 20 H 0.073 0.927 21 H 0.129 0.871 22 H 0.078 0.922 23 H 0.211 0.789 24 H 0.190 0.810 25 H 0.162 0.838 26 H 0.161 0.839 27 H 0.130 0.870 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.539 8.927 0.837 11.097 hybrid contribution 1.117 -1.000 -1.730 2.289 sum -5.422 7.927 -0.892 9.645 Atomic orbital electron populations 1.22962 0.76771 1.03870 1.01995 1.86368 1.23692 1.25184 1.87916 1.19805 0.89318 0.84895 0.94897 1.67284 1.41043 0.99206 1.20196 1.22962 0.93822 0.93628 0.94455 1.22301 0.94659 1.00142 1.04804 1.21463 1.01435 0.90548 0.94089 1.20474 0.91584 0.98378 1.03280 1.17421 0.87347 0.88227 0.92057 0.97301 1.59515 1.06482 1.15417 1.55573 1.21850 1.33460 1.10079 0.93615 0.94348 1.25708 0.94995 0.95894 1.01102 1.69831 1.35308 1.18080 1.32307 0.85621 0.77985 0.77860 0.80198 1.19469 1.20286 1.20458 0.92662 0.87142 0.92202 0.78914 0.81034 0.83758 0.83857 0.86962 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.27 10.38 113.37 1.18 2.45 15 2 O -0.32 -14.68 9.63 -89.99 -0.87 -15.55 15 3 C 0.29 12.83 7.47 84.78 0.63 13.46 15 4 N -0.55 -20.67 9.22 -308.93 -2.85 -23.51 15 5 C 0.11 3.13 11.18 84.64 0.95 4.07 15 6 C -0.20 -5.73 10.11 22.37 0.23 -5.50 15 7 C -0.05 -1.85 9.37 22.44 0.21 -1.64 15 8 C -0.13 -6.17 5.02 -19.67 -0.10 -6.27 15 9 C 0.26 13.84 2.68 43.42 0.12 13.95 15 10 H 0.01 0.56 7.71 -2.38 -0.02 0.54 15 11 N -0.84 -40.95 8.80 -174.96 -1.54 -42.49 15 12 C -0.55 -31.05 8.71 25.60 0.22 -30.82 15 13 H 0.04 2.21 7.74 -2.91 -0.02 2.19 15 14 C 0.02 1.28 5.38 84.65 0.46 1.73 15 15 N -0.92 -51.89 11.54 21.45 0.25 -51.64 15 16 Si 0.96 43.89 29.54 68.60 2.03 45.91 15 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 15 20 H 0.05 1.72 8.10 -2.39 -0.02 1.70 15 21 H 0.11 3.01 8.14 -2.39 -0.02 2.99 15 22 H 0.06 1.80 8.10 -2.39 -0.02 1.78 15 23 H 0.19 3.77 8.06 -2.91 -0.02 3.75 15 24 H 0.17 3.34 8.06 -2.91 -0.02 3.31 15 25 H 0.14 4.99 6.41 -2.91 -0.02 4.98 15 26 H 0.35 18.17 7.08 -89.69 -0.63 17.54 15 27 H 0.32 14.25 7.27 -89.69 -0.65 13.59 15 28 H 0.27 14.41 8.31 -92.71 -0.77 13.64 15 Total: -1.00 -65.55 245.32 0.81 -64.74 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -0.10 Total: 31.11 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 3.89 Total: -8.57 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -4.14 Total: -117.65 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.87 Total: -15.55 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -65.55 0.81 -64.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104521680.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.856 kcal (2) G-P(sol) polarization free energy of solvation -65.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds