Wall clock time and date at job start Mon Mar 30 2020 02:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35672 * 117.00189 * 2 1 4 4 C 1.38918 * 119.68876 * 180.02562 * 3 2 1 5 5 C 1.38377 * 119.11382 * 179.97438 * 4 3 2 6 6 C 1.38823 * 118.48319 * 359.72925 * 5 4 3 7 7 C 1.38049 * 119.29360 * 0.53027 * 6 5 4 8 8 C 1.50697 * 119.58496 * 179.73398 * 7 6 5 9 9 H 1.08996 * 109.47188 * 244.73255 * 8 7 6 10 10 N 1.46905 * 109.47125 * 4.73034 * 8 7 6 11 11 C 1.50703 * 109.47094 * 124.72961 * 8 7 6 12 12 H 1.08000 * 119.99934 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99701 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00608 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 119.99602 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47202 * 60.00054 * 15 13 11 17 17 H 1.48506 * 109.46657 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46909 * 299.99574 * 15 13 11 19 19 N 1.31963 * 120.83149 * 359.45944 * 7 6 5 20 20 H 1.08998 * 109.47407 * 59.99648 * 1 2 3 21 21 H 1.08999 * 109.47347 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46956 * 299.99375 * 1 2 3 23 23 H 1.08008 * 120.44002 * 359.95156 * 4 3 2 24 24 H 1.07998 * 120.75561 * 180.02562 * 5 4 3 25 25 H 1.08004 * 120.35493 * 180.27164 * 6 5 4 26 26 H 1.00901 * 110.99869 * 296.04907 * 10 8 7 27 27 H 1.00896 * 110.99543 * 60.00030 * 10 8 7 28 28 H 0.96991 * 120.00497 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0485 2.5131 -0.0011 6 6 3.2505 3.6490 -0.0068 7 6 1.8770 3.5097 -0.0006 8 6 1.0045 4.7384 -0.0007 9 1 0.4404 4.7835 0.9308 10 7 1.8459 5.9364 -0.1221 11 6 0.0488 4.6757 -1.1643 12 1 0.0708 3.8305 -1.8362 13 6 -0.8543 5.6970 -1.3703 14 7 -0.8814 6.7260 -0.5518 15 14 -2.0394 5.6189 -2.8122 16 1 -2.8895 4.4076 -2.6892 17 1 -2.8991 6.8298 -2.8123 18 1 -1.2711 5.5578 -4.0816 19 7 1.3186 2.3140 -0.0001 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 4.0229 0.3694 -0.0002 24 1 5.1254 2.5946 -0.0019 25 1 3.6993 4.6314 -0.0118 26 1 2.4513 6.0358 0.6790 27 1 2.3793 5.9183 -0.9784 28 1 -1.5169 7.4443 -0.6966 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104670787.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:33 Heat of formation + Delta-G solvation = -18.856607 kcal Electronic energy + Delta-G solvation = -13416.773517 eV Core-core repulsion = 11046.432770 eV Total energy + Delta-G solvation = -2370.340747 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.51328 -39.04720 -36.30415 -33.69113 -33.30917 -30.74005 -28.31530 -27.95740 -25.17531 -23.62656 -22.25742 -18.96495 -18.59429 -17.67409 -16.94549 -16.85480 -16.57112 -16.12715 -15.21264 -15.13963 -14.34323 -14.28837 -14.04615 -13.31551 -13.07582 -12.76725 -12.68722 -12.52754 -12.09475 -11.87328 -11.31943 -10.69764 -10.53552 -10.41256 -9.32009 -9.00208 -7.98801 -6.17740 0.30591 0.47002 1.42228 1.43072 1.50909 2.21943 2.45823 2.93357 3.23385 3.47843 4.04829 4.18331 4.28854 4.39081 4.41284 4.43592 4.53227 4.77286 4.87464 5.10301 5.26282 5.39235 5.58084 5.75662 6.15638 6.29910 6.57996 7.01554 7.20583 7.23415 7.52410 9.05040 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.031885 B = 0.010949 C = 0.008740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.956738 B = 2556.617846 C = 3202.914578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.319 6.319 3 C 0.288 3.712 4 C -0.211 4.211 5 C -0.030 4.030 6 C -0.231 4.231 7 C 0.143 3.857 8 C 0.269 3.731 9 H 0.017 0.983 10 N -0.811 5.811 11 C -0.528 4.528 12 H 0.038 0.962 13 C 0.036 3.964 14 N -0.879 5.879 15 Si 0.947 3.053 16 H -0.278 1.278 17 H -0.281 1.281 18 H -0.274 1.274 19 N -0.554 5.554 20 H 0.040 0.960 21 H 0.131 0.869 22 H 0.046 0.954 23 H 0.164 0.836 24 H 0.182 0.818 25 H 0.148 0.852 26 H 0.319 0.681 27 H 0.329 0.671 28 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.334 -9.377 0.875 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.227 6.227 3 C 0.108 3.892 4 C -0.231 4.231 5 C -0.055 4.055 6 C -0.251 4.251 7 C 0.005 3.995 8 C 0.158 3.842 9 H 0.035 0.965 10 N -0.340 5.340 11 C -0.567 4.567 12 H 0.056 0.944 13 C -0.168 4.168 14 N -0.516 5.516 15 Si 0.773 3.227 16 H -0.203 1.203 17 H -0.206 1.206 18 H -0.200 1.200 19 N -0.279 5.279 20 H 0.059 0.941 21 H 0.149 0.851 22 H 0.064 0.936 23 H 0.182 0.818 24 H 0.199 0.801 25 H 0.166 0.834 26 H 0.132 0.868 27 H 0.142 0.858 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.747 -9.106 0.934 11.371 hybrid contribution 0.372 -0.349 -0.627 0.809 sum 7.120 -9.454 0.307 11.839 Atomic orbital electron populations 1.22911 0.76710 1.04180 1.01475 1.86150 1.23612 1.24594 1.88319 1.20453 0.90624 0.84929 0.93149 1.21316 0.90995 1.00884 1.09908 1.21774 1.01899 0.89960 0.91841 1.22037 0.93540 1.01548 1.08009 1.22869 0.93894 0.93185 0.89566 1.17723 0.89498 0.80605 0.96356 0.96499 1.58962 1.27998 1.41857 1.05169 1.20850 1.18229 1.05187 1.12438 0.94378 1.25617 0.98004 0.94933 0.98243 1.70190 1.35346 1.08693 1.37322 0.85821 0.79191 0.77262 0.80408 1.20320 1.20573 1.19971 1.67124 1.42049 0.99067 1.19630 0.94071 0.85142 0.93563 0.81842 0.80075 0.83395 0.86834 0.85798 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 10.38 113.37 1.18 2.47 15 2 O -0.32 -10.97 10.48 -89.90 -0.94 -11.91 15 3 C 0.29 10.90 7.49 84.79 0.63 11.54 15 4 C -0.21 -6.29 10.04 22.47 0.23 -6.06 15 5 C -0.03 -0.81 10.17 22.44 0.23 -0.58 15 6 C -0.23 -7.93 9.06 22.37 0.20 -7.72 15 7 C 0.14 6.35 6.11 42.49 0.26 6.61 15 8 C 0.27 13.85 3.10 43.42 0.13 13.98 15 9 H 0.02 1.01 8.14 -2.39 -0.02 0.99 15 10 N -0.81 -37.01 7.83 -174.95 -1.37 -38.38 15 11 C -0.53 -30.15 8.53 25.60 0.22 -29.93 15 12 H 0.04 2.25 7.68 -2.91 -0.02 2.22 15 13 C 0.04 2.02 5.39 84.65 0.46 2.48 15 14 N -0.88 -51.96 12.77 21.45 0.27 -51.68 15 15 Si 0.95 44.97 29.54 68.60 2.03 47.00 15 16 H -0.28 -13.03 7.11 99.48 0.71 -12.33 15 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 18 H -0.27 -12.73 7.11 99.48 0.71 -12.03 15 19 N -0.55 -24.90 8.82 -296.99 -2.62 -27.52 15 20 H 0.04 1.41 8.10 -2.39 -0.02 1.39 15 21 H 0.13 2.79 8.14 -2.39 -0.02 2.77 15 22 H 0.05 1.51 8.10 -2.38 -0.02 1.49 15 23 H 0.16 3.71 8.06 -2.91 -0.02 3.69 15 24 H 0.18 3.10 8.06 -2.91 -0.02 3.08 15 25 H 0.15 4.42 6.18 -2.91 -0.02 4.40 15 26 H 0.32 12.42 8.10 -89.69 -0.73 11.69 15 27 H 0.33 14.10 8.25 -89.70 -0.74 13.36 15 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 15 Total: -1.00 -68.09 248.14 0.63 -67.47 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.28 Total: 22.26 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 3.54 Total: -7.23 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -3.72 Total: -117.59 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.94 Total: -11.91 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -68.09 0.63 -67.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104670787.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.611 kcal (2) G-P(sol) polarization free energy of solvation -68.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds