Wall clock time and date at job start Mon Mar 30 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35918 * 117.00207 * 2 1 4 4 C 1.38747 * 120.47030 * 359.97438 * 3 2 1 5 5 N 1.31821 * 120.67974 * 180.02562 * 4 3 2 6 6 C 1.31875 * 121.77956 * 359.72251 * 5 4 3 7 7 C 1.38216 * 120.88487 * 0.54317 * 6 5 4 8 8 C 1.50701 * 120.38417 * 179.74861 * 7 6 5 9 9 H 1.09002 * 109.47060 * 199.72121 * 8 7 6 10 10 N 1.46896 * 109.47239 * 319.72275 * 8 7 6 11 11 C 1.50703 * 109.47064 * 79.72158 * 8 7 6 12 12 H 1.07996 * 119.99751 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 8 7 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46999 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46942 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.46979 * 239.99580 * 15 13 11 19 19 C 1.38569 * 119.22598 * 359.47202 * 7 6 5 20 20 H 1.09000 * 109.46864 * 299.99637 * 1 2 3 21 21 H 1.09001 * 109.47089 * 59.99697 * 1 2 3 22 22 H 1.08996 * 109.47137 * 179.97438 * 1 2 3 23 23 H 1.07997 * 119.66437 * 0.03987 * 4 3 2 24 24 H 1.07996 * 119.55720 * 180.27048 * 6 5 4 25 25 H 1.00900 * 111.00550 * 59.99964 * 10 8 7 26 26 H 1.00896 * 111.00310 * 183.95550 * 10 8 7 27 27 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 28 28 H 1.08001 * 120.81624 * 180.27367 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8942 3.5575 -0.0010 6 6 3.2080 3.6722 0.0044 7 6 4.0179 2.5522 -0.0004 8 6 5.5180 2.6964 0.0001 9 1 5.9722 1.7696 -0.3506 10 7 5.9044 3.7988 -0.8905 11 6 5.9938 2.9908 1.3994 12 1 5.2812 3.0665 2.2074 13 6 7.3388 3.1647 1.6479 14 7 8.2066 3.0731 0.6639 15 14 7.9287 3.5290 3.3826 16 1 6.7631 3.5799 4.3013 17 1 8.8606 2.4601 3.8232 18 1 8.6313 4.8372 3.4019 19 6 3.4345 1.2953 0.0001 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.2214 2.3269 -0.0003 24 1 3.6570 4.6543 0.0082 25 1 5.4956 4.6697 -0.5864 26 1 6.9082 3.8745 -0.9577 27 1 9.1528 3.1958 0.8387 28 1 4.0429 0.4030 0.0009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104672359.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:10 Heat of formation + Delta-G solvation = -9.188177 kcal Electronic energy + Delta-G solvation = -13245.971717 eV Core-core repulsion = 10876.050224 eV Total energy + Delta-G solvation = -2369.921492 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.10435 -37.82587 -34.95264 -32.04373 -30.98215 -29.10073 -27.37282 -26.00157 -23.21461 -22.90646 -20.32255 -17.43368 -16.73444 -16.36891 -15.94113 -15.59747 -14.94949 -14.20999 -13.73686 -13.25418 -12.72773 -12.70701 -12.42029 -11.85714 -11.52339 -11.31120 -11.22669 -10.97639 -10.85491 -10.12147 -10.07975 -8.93247 -8.77328 -8.57807 -7.88564 -7.28683 -6.16913 -4.34065 1.80588 1.91913 3.18301 3.27383 3.32419 3.45680 4.25559 4.47632 4.97420 5.04245 5.06234 5.18815 5.30266 5.46868 5.58307 5.77252 6.01292 6.25526 6.47038 6.59932 6.85622 7.12074 7.55989 7.60991 7.67345 7.97738 8.51739 8.59883 8.83686 9.03186 9.38336 10.81138 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.045063 B = 0.008253 C = 0.007894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.201346 B = 3391.837947 C = 3546.288581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.069 3.931 4 C -0.015 4.015 5 N -0.458 5.458 6 C 0.070 3.930 7 C -0.032 4.032 8 C 0.243 3.757 9 H 0.052 0.948 10 N -0.849 5.849 11 C -0.546 4.546 12 H 0.057 0.943 13 C 0.068 3.932 14 N -0.891 5.891 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.116 4.116 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.096 0.904 23 H 0.146 0.854 24 H 0.154 0.846 25 H 0.313 0.687 26 H 0.359 0.641 27 H 0.267 0.733 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.260 -2.962 -0.823 10.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.023 3.977 4 C -0.172 4.172 5 N -0.167 5.167 6 C -0.089 4.089 7 C -0.035 4.035 8 C 0.132 3.868 9 H 0.070 0.930 10 N -0.380 5.380 11 C -0.586 4.586 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.530 5.530 15 Si 0.727 3.273 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.143 4.143 20 H 0.072 0.928 21 H 0.072 0.928 22 H 0.115 0.885 23 H 0.163 0.837 24 H 0.171 0.829 25 H 0.123 0.877 26 H 0.175 0.825 27 H 0.077 0.923 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.875 -2.839 -1.453 11.333 hybrid contribution 1.125 -0.128 1.896 2.209 sum -9.750 -2.967 0.444 10.201 Atomic orbital electron populations 1.22992 0.79006 1.03517 1.01230 1.86047 1.20847 1.26878 1.89202 1.20029 0.93195 0.85142 0.99378 1.22567 0.99624 0.87628 1.07421 1.67448 1.12712 1.26296 1.10242 1.22405 0.87769 0.99365 0.99355 1.21346 0.99752 0.91634 0.90722 1.17983 0.83717 0.93590 0.91489 0.93021 1.59517 1.17974 1.07006 1.53480 1.21800 0.92543 1.49833 0.94437 0.92433 1.25011 0.96506 0.94372 0.97590 1.69746 1.02553 1.49386 1.31326 0.86418 0.78777 0.77984 0.84151 1.19689 1.20776 1.20823 1.20811 0.90876 0.99031 1.03580 0.92823 0.92823 0.88549 0.83724 0.82916 0.87744 0.82473 0.92348 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.82 101.05 0.99 1.29 15 2 O -0.32 -5.01 10.51 -19.48 -0.20 -5.21 15 3 C 0.07 1.26 6.71 -39.07 -0.26 0.99 15 4 C -0.02 -0.26 10.22 -17.37 -0.18 -0.44 15 5 N -0.46 -9.03 10.36 -13.13 -0.14 -9.16 15 6 C 0.07 1.45 10.46 -17.54 -0.18 1.26 15 7 C -0.03 -0.70 4.90 -104.51 -0.51 -1.21 15 8 C 0.24 5.93 2.96 -70.02 -0.21 5.73 15 9 H 0.05 1.37 8.03 -51.93 -0.42 0.96 15 10 N -0.85 -19.76 9.02 -6.65 -0.06 -19.82 15 11 C -0.55 -14.40 8.71 -34.44 -0.30 -14.70 15 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 15 13 C 0.07 1.79 5.38 -17.82 -0.10 1.70 15 14 N -0.89 -23.95 11.54 55.43 0.64 -23.32 15 15 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 15 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 19 C -0.12 -2.36 9.77 -39.14 -0.38 -2.74 15 20 H 0.05 0.52 7.68 -51.93 -0.40 0.12 15 21 H 0.05 0.51 7.68 -51.93 -0.40 0.11 15 22 H 0.10 0.77 8.14 -51.93 -0.42 0.34 15 23 H 0.15 2.03 6.32 -52.49 -0.33 1.70 15 24 H 0.15 3.03 6.68 -52.49 -0.35 2.68 15 25 H 0.31 6.85 7.37 -39.29 -0.29 6.56 15 26 H 0.36 8.89 7.08 -39.29 -0.28 8.61 15 27 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 28 H 0.14 2.64 8.06 -52.49 -0.42 2.22 15 LS Contribution 244.31 15.07 3.68 3.68 Total: -1.00 -28.29 244.31 -5.08 -33.37 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -2.85 Total: 12.98 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.13 Total: -8.13 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.44 Total: -52.30 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.20 Total: -5.21 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.29 -5.08 -33.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104672359.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.180 kcal (2) G-P(sol) polarization free energy of solvation -28.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds