Wall clock time and date at job start Mon Mar 30 2020 02:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35918 * 117.00207 * 2 1 4 4 C 1.38747 * 120.47030 * 359.97438 * 3 2 1 5 5 N 1.31821 * 120.67974 * 180.02562 * 4 3 2 6 6 C 1.31875 * 121.77956 * 359.72251 * 5 4 3 7 7 C 1.38216 * 120.88487 * 0.54317 * 6 5 4 8 8 C 1.50701 * 120.38417 * 179.74861 * 7 6 5 9 9 H 1.09002 * 109.47060 * 199.72121 * 8 7 6 10 10 N 1.46896 * 109.47239 * 319.72275 * 8 7 6 11 11 C 1.50703 * 109.47064 * 79.72158 * 8 7 6 12 12 H 1.07996 * 119.99751 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 8 7 14 14 N 1.31517 * 120.00094 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99955 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46999 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46942 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.46979 * 239.99580 * 15 13 11 19 19 C 1.38569 * 119.22598 * 359.47202 * 7 6 5 20 20 H 1.09000 * 109.46864 * 299.99637 * 1 2 3 21 21 H 1.09001 * 109.47089 * 59.99697 * 1 2 3 22 22 H 1.08996 * 109.47137 * 179.97438 * 1 2 3 23 23 H 1.07997 * 119.66437 * 0.03987 * 4 3 2 24 24 H 1.07996 * 119.55720 * 180.27048 * 6 5 4 25 25 H 1.00900 * 111.00550 * 59.99964 * 10 8 7 26 26 H 1.00896 * 111.00310 * 183.95550 * 10 8 7 27 27 H 0.97000 * 120.00333 * 179.97438 * 14 13 11 28 28 H 1.08001 * 120.81624 * 180.27367 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.3000 2.3808 -0.0005 5 7 1.8942 3.5575 -0.0010 6 6 3.2080 3.6722 0.0044 7 6 4.0179 2.5522 -0.0004 8 6 5.5180 2.6964 0.0001 9 1 5.9722 1.7696 -0.3506 10 7 5.9044 3.7988 -0.8905 11 6 5.9938 2.9908 1.3994 12 1 5.2812 3.0665 2.2074 13 6 7.3388 3.1647 1.6479 14 7 8.2066 3.0731 0.6639 15 14 7.9287 3.5290 3.3826 16 1 6.7631 3.5799 4.3013 17 1 8.8606 2.4601 3.8232 18 1 8.6313 4.8372 3.4019 19 6 3.4345 1.2953 0.0001 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.2214 2.3269 -0.0003 24 1 3.6570 4.6543 0.0082 25 1 5.4956 4.6697 -0.5864 26 1 6.9082 3.8745 -0.9577 27 1 9.1528 3.1958 0.8387 28 1 4.0429 0.4030 0.0009 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104672359.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:10 Heat of formation + Delta-G solvation = -29.812904 kcal Electronic energy + Delta-G solvation = -13246.866072 eV Core-core repulsion = 10876.050224 eV Total energy + Delta-G solvation = -2370.815848 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.53669 -39.17051 -36.78102 -33.87885 -32.60034 -30.68221 -28.48406 -27.85568 -24.90919 -24.42709 -21.95102 -18.84849 -18.64367 -17.81966 -17.45135 -16.80508 -16.72083 -15.96064 -15.06110 -14.94413 -14.35570 -14.28583 -13.96015 -13.34986 -13.25920 -12.89222 -12.69204 -12.61033 -12.32651 -12.01312 -11.94196 -10.81360 -10.35311 -10.28444 -9.34067 -9.21012 -8.15876 -6.41613 0.29790 0.36757 1.36618 1.40337 1.51085 2.28080 2.36410 2.91584 3.03594 3.61441 3.75277 3.99860 4.19119 4.39920 4.43387 4.45702 4.60715 4.75117 4.78236 5.01632 5.13049 5.59791 5.61815 5.71958 5.99396 6.32094 6.58314 6.85973 7.02367 7.09682 7.35195 8.79681 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.045063 B = 0.008253 C = 0.007894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.201346 B = 3391.837947 C = 3546.288581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.081 3.919 4 C -0.005 4.005 5 N -0.464 5.464 6 C 0.058 3.942 7 C -0.053 4.053 8 C 0.248 3.752 9 H 0.020 0.980 10 N -0.842 5.842 11 C -0.561 4.561 12 H 0.046 0.954 13 C 0.027 3.973 14 N -0.912 5.912 15 Si 0.961 3.039 16 H -0.274 1.274 17 H -0.279 1.279 18 H -0.275 1.275 19 C -0.134 4.134 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.125 0.875 23 H 0.187 0.813 24 H 0.154 0.846 25 H 0.321 0.679 26 H 0.349 0.651 27 H 0.270 0.730 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.049 -3.183 -0.265 12.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.033 3.967 4 C -0.163 4.163 5 N -0.173 5.173 6 C -0.100 4.100 7 C -0.056 4.056 8 C 0.137 3.863 9 H 0.038 0.962 10 N -0.371 5.371 11 C -0.600 4.600 12 H 0.064 0.936 13 C -0.174 4.174 14 N -0.551 5.551 15 Si 0.786 3.214 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.201 1.201 19 C -0.161 4.161 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.143 0.857 23 H 0.204 0.796 24 H 0.171 0.829 25 H 0.131 0.869 26 H 0.164 0.836 27 H 0.079 0.921 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.678 -3.057 -0.901 13.073 hybrid contribution 1.524 -0.174 1.687 2.280 sum -11.154 -3.232 0.786 11.639 Atomic orbital electron populations 1.23448 0.75891 1.06063 1.02623 1.86054 1.23954 1.25515 1.88575 1.19954 0.92412 0.86446 0.97846 1.23213 1.01446 0.86606 1.05082 1.67506 1.11911 1.27400 1.10460 1.22355 0.88350 0.98992 1.00264 1.21099 0.98321 0.92939 0.93240 1.17749 0.85567 0.92339 0.90604 0.96231 1.59470 1.17171 1.07269 1.53212 1.21961 0.92751 1.50245 0.95075 0.93570 1.25702 0.96578 0.94160 1.00989 1.69833 1.02812 1.49649 1.32850 0.85468 0.78025 0.77962 0.79902 1.19904 1.20463 1.20084 1.20885 0.92497 0.98393 1.04345 0.91446 0.91243 0.85693 0.79594 0.82867 0.86865 0.83561 0.92091 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.82 113.37 1.11 1.35 15 2 O -0.33 -9.50 10.51 -92.62 -0.97 -10.47 15 3 C 0.08 2.79 6.71 22.60 0.15 2.94 15 4 C -0.01 -0.17 10.22 84.82 0.87 0.70 15 5 N -0.46 -17.49 10.36 -195.44 -2.02 -19.52 15 6 C 0.06 2.39 10.46 84.68 0.89 3.28 15 7 C -0.05 -2.38 4.90 -19.79 -0.10 -2.48 15 8 C 0.25 12.51 2.96 43.43 0.13 12.64 15 9 H 0.02 1.10 8.03 -2.39 -0.02 1.08 15 10 N -0.84 -40.09 9.02 -174.95 -1.58 -41.67 15 11 C -0.56 -30.13 8.71 25.60 0.22 -29.91 15 12 H 0.05 2.53 7.74 -2.91 -0.02 2.51 15 13 C 0.03 1.41 5.38 84.65 0.46 1.86 15 14 N -0.91 -49.61 11.54 21.45 0.25 -49.36 15 15 Si 0.96 42.44 29.54 68.60 2.03 44.46 15 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 17 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 18 H -0.28 -11.79 7.11 99.48 0.71 -11.09 15 19 C -0.13 -5.47 9.77 22.56 0.22 -5.25 15 20 H 0.07 1.00 7.68 -2.39 -0.02 0.98 15 21 H 0.07 1.00 7.68 -2.39 -0.02 0.98 15 22 H 0.12 1.45 8.14 -2.39 -0.02 1.43 15 23 H 0.19 4.34 6.32 -2.91 -0.02 4.32 15 24 H 0.15 6.14 6.68 -2.91 -0.02 6.12 15 25 H 0.32 14.29 7.37 -89.69 -0.66 13.63 15 26 H 0.35 17.74 7.08 -89.70 -0.63 17.11 15 27 H 0.27 13.87 8.31 -92.71 -0.77 13.10 15 28 H 0.13 5.31 8.06 -2.91 -0.02 5.29 15 Total: -1.00 -60.32 244.31 1.54 -58.78 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: -0.10 Total: 32.65 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 3.95 Total: -14.88 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -3.36 Total: -110.55 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.97 Total: -10.47 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -60.32 1.54 -58.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104672359.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.971 kcal (2) G-P(sol) polarization free energy of solvation -60.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds