Wall clock time and date at job start Mon Mar 30 2020 02:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00389 * 2 1 4 4 H 1.48506 * 109.47100 * 89.99884 * 3 2 1 5 5 H 1.48499 * 109.47366 * 209.99914 * 3 2 1 6 6 H 1.48502 * 109.46984 * 329.99890 * 3 2 1 7 7 C 1.37878 * 119.99431 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00204 * 343.28079 * 7 2 1 9 9 C 1.50700 * 120.00056 * 163.28853 * 7 2 1 10 10 H 1.09002 * 109.47222 * 54.49038 * 9 7 2 11 11 N 1.46907 * 109.46942 * 294.49214 * 9 7 2 12 12 C 1.50692 * 109.47538 * 174.49229 * 9 7 2 13 13 C 1.38015 * 120.30731 * 79.72487 * 12 9 7 14 14 N 1.32048 * 120.98947 * 179.70397 * 13 12 9 15 15 C 1.32261 * 121.69568 * 0.58391 * 14 13 12 16 16 N 1.39290 * 119.74298 * 179.68314 * 15 14 13 17 17 C 1.39715 * 120.51269 * 359.70195 * 15 14 13 18 18 N 1.40013 * 120.51138 * 180.02562 * 17 15 14 19 19 C 1.38841 * 120.31074 * 259.99921 * 12 9 7 20 20 H 0.96992 * 120.00066 * 179.25555 * 1 2 3 21 21 H 1.00893 * 110.99765 * 305.62276 * 11 9 7 22 22 H 1.00903 * 111.00108 * 69.57718 * 11 9 7 23 23 H 1.07993 * 119.50207 * 359.97354 * 13 12 9 24 24 H 0.97003 * 120.00180 * 180.02562 * 16 15 14 25 25 H 0.97000 * 120.00071 * 0.02562 * 16 15 14 26 26 H 0.97000 * 119.99727 * 179.97438 * 18 17 15 27 27 H 0.97001 * 119.99939 * 359.97438 * 18 17 15 28 28 H 1.08001 * 120.77412 * 0.02562 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4468 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4986 -2.1097 0.2681 9 6 3.4637 -1.2217 -0.3758 10 1 4.0130 -0.5178 0.2494 11 7 3.6135 -0.8431 -1.7874 12 6 4.0099 -2.6106 -0.1676 13 6 3.7827 -3.5963 -1.1066 14 7 4.2598 -4.8164 -0.9406 15 6 4.9616 -5.1484 0.1302 16 7 5.4400 -6.4494 0.2668 17 6 5.2265 -4.2043 1.1255 18 7 5.9699 -4.5557 2.2587 19 6 4.7415 -2.9122 0.9732 20 1 -0.4850 -0.8399 -0.0109 21 1 3.0403 -1.4243 -2.3803 22 1 3.4012 0.1338 -1.9242 23 1 3.2097 -3.3652 -1.9923 24 1 5.9548 -6.6971 1.0508 25 1 5.2583 -7.1078 -0.4220 26 1 6.1497 -3.8942 2.9450 27 1 6.3050 -5.4605 2.3576 28 1 4.9286 -2.1594 1.7247 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104674765.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:39 Heat of formation + Delta-G solvation = 38.925057 kcal Electronic energy + Delta-G solvation = -13335.980654 eV Core-core repulsion = 11000.438259 eV Total energy + Delta-G solvation = -2335.542395 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.70994 -35.81372 -34.34138 -33.40054 -31.71490 -29.92628 -27.53658 -25.61752 -22.72637 -22.56066 -19.79706 -17.99547 -17.55832 -16.85139 -15.87537 -15.33375 -15.01662 -14.08703 -13.97125 -13.61412 -13.12205 -12.67816 -12.33434 -12.23606 -11.39628 -10.83699 -10.81378 -10.56931 -10.07798 -9.98603 -9.32223 -8.80459 -8.44287 -8.21058 -7.51077 -6.69499 -6.37029 -4.20411 2.10575 2.22062 3.33105 3.36583 3.51085 3.88564 4.14798 4.38844 4.68386 5.17093 5.27738 5.57389 5.90567 6.00578 6.19268 6.28926 6.59336 6.74709 7.19161 7.32289 7.50752 7.81781 7.84622 7.94705 8.00029 8.25186 8.42893 8.56157 8.84937 8.91149 9.51386 10.82592 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.049158 B = 0.008902 C = 0.008514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.459299 B = 3144.731496 C = 3287.798262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.031 3.969 3 Si 1.044 2.956 4 H -0.285 1.285 5 H -0.268 1.268 6 H -0.284 1.284 7 C -0.625 4.625 8 H 0.057 0.943 9 C 0.222 3.778 10 H 0.040 0.960 11 N -0.854 5.854 12 C -0.069 4.069 13 C 0.093 3.907 14 N -0.512 5.512 15 C 0.316 3.684 16 N -0.869 5.869 17 C 0.103 3.897 18 N -0.883 5.883 19 C -0.126 4.126 20 H 0.270 0.730 21 H 0.327 0.673 22 H 0.326 0.674 23 H 0.148 0.852 24 H 0.393 0.607 25 H 0.398 0.602 26 H 0.395 0.605 27 H 0.387 0.613 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.078 -7.196 2.474 13.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.175 4.175 3 Si 0.871 3.129 4 H -0.211 1.211 5 H -0.194 1.194 6 H -0.210 1.210 7 C -0.664 4.664 8 H 0.075 0.925 9 C 0.112 3.888 10 H 0.058 0.942 11 N -0.384 5.384 12 C -0.074 4.074 13 C -0.064 4.064 14 N -0.228 5.228 15 C 0.076 3.924 16 N -0.418 5.418 17 C -0.003 4.003 18 N -0.428 5.428 19 C -0.157 4.157 20 H 0.080 0.920 21 H 0.139 0.861 22 H 0.140 0.860 23 H 0.165 0.835 24 H 0.222 0.778 25 H 0.226 0.774 26 H 0.223 0.777 27 H 0.214 0.786 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.397 -6.252 1.851 13.130 hybrid contribution -0.509 -1.325 1.252 1.893 sum 10.888 -7.578 3.103 13.624 Atomic orbital electron populations 1.70809 1.07049 1.30581 1.44825 1.25851 0.96231 1.02476 0.92963 0.84021 0.75707 0.75575 0.77548 1.21121 1.19410 1.21033 1.22630 0.94678 0.96489 1.52632 0.92512 1.18133 0.94947 0.88422 0.87337 0.94169 1.59717 1.62414 1.07903 1.08386 1.20585 0.95277 0.98322 0.93226 1.21818 0.98771 0.86381 0.99401 1.66960 1.12974 1.21789 1.21086 1.17801 0.97391 0.85991 0.91178 1.41776 1.64125 1.08827 1.27090 1.18055 0.98883 0.93970 0.89427 1.42050 1.63490 1.14462 1.22803 1.20681 1.01427 0.94078 0.99491 0.92018 0.86125 0.85987 0.83512 0.77842 0.77379 0.77650 0.78600 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.70 55.43 0.76 -26.22 15 2 C 0.03 0.87 5.43 -17.82 -0.10 0.77 15 3 Si 1.04 23.99 26.56 -169.99 -4.51 19.48 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.27 -5.63 5.50 56.52 0.31 -5.32 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.62 -17.11 8.95 -34.44 -0.31 -17.41 15 8 H 0.06 1.73 7.99 -52.49 -0.42 1.31 15 9 C 0.22 5.25 2.42 -70.02 -0.17 5.08 15 10 H 0.04 0.96 6.61 -51.93 -0.34 0.62 15 11 N -0.85 -18.69 8.94 -6.65 -0.06 -18.75 15 12 C -0.07 -1.52 4.91 -104.48 -0.51 -2.03 15 13 C 0.09 1.99 10.46 -17.54 -0.18 1.81 15 14 N -0.51 -10.30 10.39 -12.24 -0.13 -10.43 15 15 C 0.32 5.59 7.78 -154.64 -1.20 4.39 15 16 N -0.87 -11.20 9.08 31.28 0.28 -10.91 15 17 C 0.10 1.76 6.81 -83.34 -0.57 1.19 15 18 N -0.88 -10.77 9.09 32.62 0.30 -10.48 15 19 C -0.13 -2.46 9.68 -39.13 -0.38 -2.84 15 20 H 0.27 8.15 8.72 -40.82 -0.36 7.79 15 21 H 0.33 6.97 7.55 -39.30 -0.30 6.67 15 22 H 0.33 7.05 5.82 -39.29 -0.23 6.82 15 23 H 0.15 3.07 6.79 -52.49 -0.36 2.71 15 24 H 0.39 3.82 7.00 -40.82 -0.29 3.54 15 25 H 0.40 4.71 8.95 -40.82 -0.37 4.34 15 26 H 0.40 4.20 8.86 -40.82 -0.36 3.84 15 27 H 0.39 3.68 7.03 -40.82 -0.29 3.39 15 28 H 0.12 2.24 8.06 -52.49 -0.42 1.82 15 LS Contribution 237.28 15.07 3.58 3.58 Total: -1.00 -31.64 237.28 -5.81 -37.45 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -2.61 Total: 25.33 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -3.42 Total: -9.05 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: 1.15 Total: -76.79 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -4.51 Total: 19.48 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.64 -5.81 -37.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104674765.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.375 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds