Wall clock time and date at job start Mon Mar 30 2020 02:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00389 * 2 1 4 4 H 1.48506 * 109.47100 * 89.99884 * 3 2 1 5 5 H 1.48499 * 109.47366 * 209.99914 * 3 2 1 6 6 H 1.48502 * 109.46984 * 329.99890 * 3 2 1 7 7 C 1.37878 * 119.99431 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00204 * 343.28079 * 7 2 1 9 9 C 1.50700 * 120.00056 * 163.28853 * 7 2 1 10 10 H 1.09002 * 109.47222 * 54.49038 * 9 7 2 11 11 N 1.46907 * 109.46942 * 294.49214 * 9 7 2 12 12 C 1.50692 * 109.47538 * 174.49229 * 9 7 2 13 13 C 1.38015 * 120.30731 * 79.72487 * 12 9 7 14 14 N 1.32048 * 120.98947 * 179.70397 * 13 12 9 15 15 C 1.32261 * 121.69568 * 0.58391 * 14 13 12 16 16 N 1.39290 * 119.74298 * 179.68314 * 15 14 13 17 17 C 1.39715 * 120.51269 * 359.70195 * 15 14 13 18 18 N 1.40013 * 120.51138 * 180.02562 * 17 15 14 19 19 C 1.38841 * 120.31074 * 259.99921 * 12 9 7 20 20 H 0.96992 * 120.00066 * 179.25555 * 1 2 3 21 21 H 1.00893 * 110.99765 * 305.62276 * 11 9 7 22 22 H 1.00903 * 111.00108 * 69.57718 * 11 9 7 23 23 H 1.07993 * 119.50207 * 359.97354 * 13 12 9 24 24 H 0.97003 * 120.00180 * 180.02562 * 16 15 14 25 25 H 0.97000 * 120.00071 * 0.02562 * 16 15 14 26 26 H 0.97000 * 119.99727 * 179.97438 * 18 17 15 27 27 H 0.97001 * 119.99939 * 359.97438 * 18 17 15 28 28 H 1.08001 * 120.77412 * 0.02562 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4468 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4986 -2.1097 0.2681 9 6 3.4637 -1.2217 -0.3758 10 1 4.0130 -0.5178 0.2494 11 7 3.6135 -0.8431 -1.7874 12 6 4.0099 -2.6106 -0.1676 13 6 3.7827 -3.5963 -1.1066 14 7 4.2598 -4.8164 -0.9406 15 6 4.9616 -5.1484 0.1302 16 7 5.4400 -6.4494 0.2668 17 6 5.2265 -4.2043 1.1255 18 7 5.9699 -4.5557 2.2587 19 6 4.7415 -2.9122 0.9732 20 1 -0.4850 -0.8399 -0.0109 21 1 3.0403 -1.4243 -2.3803 22 1 3.4012 0.1338 -1.9242 23 1 3.2097 -3.3652 -1.9923 24 1 5.9548 -6.6971 1.0508 25 1 5.2583 -7.1078 -0.4220 26 1 6.1497 -3.8942 2.9450 27 1 6.3050 -5.4605 2.3576 28 1 4.9286 -2.1594 1.7247 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104674765.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:38 Heat of formation + Delta-G solvation = 11.329384 kcal Electronic energy + Delta-G solvation = -13337.177292 eV Core-core repulsion = 11000.438259 eV Total energy + Delta-G solvation = -2336.739033 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16125 -37.46204 -35.77282 -34.89238 -33.66952 -31.37321 -28.97589 -27.58389 -24.30837 -24.15574 -21.47755 -19.84634 -19.08780 -18.20305 -17.29567 -16.81747 -16.28678 -15.67929 -15.55288 -15.20764 -14.82027 -14.55252 -14.25155 -13.78785 -13.18252 -12.53436 -12.37738 -12.10134 -11.80807 -11.45253 -11.31599 -10.60522 -10.31426 -9.64677 -9.41284 -8.67714 -7.85192 -6.43839 0.61924 0.70552 1.49734 1.53291 1.72436 2.46685 2.72542 2.95524 3.04330 3.16485 3.82747 4.02449 4.39387 4.48164 4.62127 4.73139 4.99996 5.12989 5.65662 5.78465 5.87346 5.98280 6.22945 6.43681 6.60069 6.72105 6.72739 6.87721 7.01528 7.37022 7.51312 8.57868 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.049158 B = 0.008902 C = 0.008514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.459299 B = 3144.731496 C = 3287.798262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.018 4.018 3 Si 1.091 2.909 4 H -0.274 1.274 5 H -0.236 1.236 6 H -0.285 1.285 7 C -0.621 4.621 8 H 0.010 0.990 9 C 0.229 3.771 10 H 0.045 0.955 11 N -0.843 5.843 12 C -0.098 4.098 13 C 0.071 3.929 14 N -0.529 5.529 15 C 0.314 3.686 16 N -0.848 5.848 17 C 0.117 3.883 18 N -0.861 5.861 19 C -0.144 4.144 20 H 0.252 0.748 21 H 0.329 0.671 22 H 0.329 0.671 23 H 0.137 0.863 24 H 0.411 0.589 25 H 0.406 0.594 26 H 0.408 0.592 27 H 0.403 0.597 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.665 -7.589 3.350 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.217 4.217 3 Si 0.911 3.089 4 H -0.199 1.199 5 H -0.160 1.160 6 H -0.211 1.211 7 C -0.660 4.660 8 H 0.028 0.972 9 C 0.118 3.882 10 H 0.063 0.937 11 N -0.373 5.373 12 C -0.104 4.104 13 C -0.085 4.085 14 N -0.246 5.246 15 C 0.072 3.928 16 N -0.399 5.399 17 C 0.008 3.992 18 N -0.407 5.407 19 C -0.176 4.176 20 H 0.060 0.940 21 H 0.141 0.859 22 H 0.143 0.857 23 H 0.155 0.845 24 H 0.243 0.757 25 H 0.236 0.764 26 H 0.238 0.762 27 H 0.234 0.766 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.032 -6.713 2.761 15.798 hybrid contribution -1.252 -1.442 1.062 2.185 sum 12.780 -8.155 3.823 15.635 Atomic orbital electron populations 1.70953 1.08407 1.29466 1.47887 1.27349 0.96077 1.06397 0.91882 0.83459 0.75728 0.71183 0.78505 1.19931 1.16023 1.21125 1.22753 0.96955 0.94589 1.51741 0.97187 1.17979 0.92272 0.90083 0.87879 0.93727 1.59673 1.62125 1.08073 1.07419 1.20488 0.97453 0.97495 0.94921 1.21672 1.00023 0.87187 0.99587 1.66941 1.14056 1.21185 1.22437 1.18173 0.96397 0.87681 0.90566 1.41720 1.63084 1.07076 1.27989 1.18038 0.97923 0.92938 0.90313 1.41975 1.61671 1.15799 1.21259 1.20824 1.01948 0.95624 0.99164 0.93959 0.85918 0.85712 0.84517 0.75716 0.76400 0.76221 0.76624 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.70 21.45 0.29 -57.38 15 2 C -0.02 -1.02 5.43 84.65 0.46 -0.56 15 3 Si 1.09 47.81 26.56 68.60 1.82 49.63 15 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 15 5 H -0.24 -9.05 5.50 99.48 0.55 -8.51 15 6 H -0.29 -12.53 7.11 99.48 0.71 -11.83 15 7 C -0.62 -34.91 8.95 25.60 0.23 -34.68 15 8 H 0.01 0.63 7.99 -2.91 -0.02 0.60 15 9 C 0.23 10.78 2.42 43.42 0.11 10.89 15 10 H 0.04 2.06 6.61 -2.39 -0.02 2.04 15 11 N -0.84 -36.38 8.94 -174.95 -1.56 -37.95 15 12 C -0.10 -4.32 4.91 -19.78 -0.10 -4.42 15 13 C 0.07 3.07 10.46 84.61 0.89 3.96 15 14 N -0.53 -20.94 10.39 -192.63 -2.00 -22.94 15 15 C 0.31 10.42 7.78 133.15 1.04 11.46 15 16 N -0.85 -19.03 9.08 -54.96 -0.50 -19.53 15 17 C 0.12 3.69 6.81 38.34 0.26 3.96 15 18 N -0.86 -17.66 9.09 -50.70 -0.46 -18.12 15 19 C -0.14 -5.44 9.68 22.56 0.22 -5.22 15 20 H 0.25 16.01 8.72 -92.71 -0.81 15.20 15 21 H 0.33 14.16 7.55 -89.70 -0.68 13.48 15 22 H 0.33 13.69 5.82 -89.69 -0.52 13.17 15 23 H 0.14 5.96 6.79 -2.91 -0.02 5.94 15 24 H 0.41 6.25 7.00 -92.71 -0.65 5.60 15 25 H 0.41 8.35 8.95 -92.71 -0.83 7.52 15 26 H 0.41 7.02 8.86 -92.71 -0.82 6.20 15 27 H 0.40 5.83 7.03 -92.71 -0.65 5.17 15 28 H 0.14 4.68 8.06 -2.91 -0.02 4.65 15 Total: -1.00 -70.05 237.28 -2.39 -72.44 By element: Atomic # 1 Polarization: 51.55 SS G_CDS: -3.08 Total: 48.47 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 3.10 Total: -14.62 kcal Atomic # 7 Polarization: -151.68 SS G_CDS: -4.23 Total: -155.91 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.82 Total: 49.63 kcal Total: -70.05 -2.39 -72.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104674765.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.769 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds