Wall clock time and date at job start Mon Mar 30 2020 02:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.50701 * 109.47433 * 120.00046 * 2 1 3 13 13 C 1.38253 * 119.99926 * 59.73014 * 12 2 1 14 14 C 1.38212 * 119.99853 * 179.76947 * 13 12 2 15 15 C 1.38251 * 120.00098 * 0.50509 * 14 13 12 16 16 C 1.38212 * 119.99914 * 359.74858 * 15 14 13 17 17 C 1.50706 * 120.00066 * 179.97438 * 16 15 14 18 18 F 1.39903 * 109.46980 * 270.02098 * 17 16 15 19 19 C 1.38209 * 120.00090 * 240.00347 * 12 2 1 20 20 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 22 22 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 23 23 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 24 24 H 1.08006 * 119.99931 * 359.97438 * 13 12 2 25 25 H 1.08007 * 120.00037 * 180.23109 * 14 13 12 26 26 H 1.08006 * 120.00187 * 179.72628 * 15 14 13 27 27 H 1.09001 * 109.46768 * 30.01626 * 17 16 15 28 28 H 1.08997 * 109.47268 * 150.01928 * 17 16 15 29 29 H 1.08004 * 120.00077 * 0.02562 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 6 2.0324 -0.7104 1.2304 13 6 1.6939 -2.0324 1.4520 14 6 2.1586 -2.6853 2.5781 15 6 2.9533 -2.0134 3.4882 16 6 3.2875 -0.6903 3.2693 17 6 4.1534 0.0423 4.2616 18 9 3.3440 0.6497 5.2277 19 6 2.8270 -0.0387 2.1402 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.7087 1.1613 -3.4844 24 1 1.0690 -2.5559 0.7435 25 1 1.8971 -3.7192 2.7493 26 1 3.3128 -2.5224 4.3704 27 1 4.8288 -0.6635 4.7451 28 1 4.7347 0.8048 3.7432 29 1 3.0875 0.9955 1.9696 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147510493.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:52 Heat of formation + Delta-G solvation = -45.430001 kcal Electronic energy + Delta-G solvation = -13093.999661 eV Core-core repulsion = 10702.586644 eV Total energy + Delta-G solvation = -2391.413017 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.41347 -38.78749 -34.53975 -31.84661 -31.12681 -28.45882 -25.91580 -25.14855 -22.44078 -21.47846 -19.28388 -16.37390 -16.07019 -15.72045 -15.63605 -15.02943 -14.57116 -14.07781 -13.51277 -12.87588 -12.47985 -12.09138 -11.75047 -11.48244 -11.15119 -10.97733 -10.85813 -10.80444 -10.50470 -10.28681 -10.04994 -9.40787 -9.05676 -8.40093 -8.32779 -7.85859 -6.03613 -4.10848 1.86770 2.06048 3.29525 3.34296 3.37065 4.32833 4.45950 4.87149 4.96281 5.07968 5.27210 5.51336 5.54784 5.85721 5.93639 6.08608 6.23864 6.48974 6.65480 6.82974 6.94400 7.01390 7.15791 7.17990 7.31354 7.63749 7.70476 7.93687 8.06779 8.36138 8.91411 9.53861 11.02006 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.044883 B = 0.007952 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.689118 B = 3520.450540 C = 3637.938926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 H 0.035 0.965 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.894 3.106 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.277 1.277 12 C -0.032 4.032 13 C -0.101 4.101 14 C -0.129 4.129 15 C -0.128 4.128 16 C -0.145 4.145 17 C 0.110 3.890 18 F -0.217 7.217 19 C -0.109 4.109 20 H 0.028 0.972 21 H 0.009 0.991 22 H 0.086 0.914 23 H 0.262 0.738 24 H 0.123 0.877 25 H 0.114 0.886 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -3.351 9.284 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.051 3.949 3 H 0.053 0.947 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.202 1.202 12 C -0.032 4.032 13 C -0.119 4.119 14 C -0.147 4.147 15 C -0.146 4.146 16 C -0.146 4.146 17 C 0.056 3.944 18 F -0.198 7.198 19 C -0.127 4.127 20 H 0.047 0.953 21 H 0.028 0.972 22 H 0.104 0.896 23 H 0.072 0.928 24 H 0.141 0.859 25 H 0.132 0.868 26 H 0.129 0.871 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.722 -3.211 9.165 10.400 hybrid contribution 0.303 -0.483 -0.873 1.043 sum 4.024 -3.694 8.292 9.930 Atomic orbital electron populations 1.21789 0.97539 0.99312 1.00341 1.17911 0.92956 0.95457 0.88527 0.94716 1.21066 1.31357 1.12440 0.89858 0.92517 1.24962 0.95009 0.94991 0.98952 1.69878 1.36519 1.22832 1.23576 0.86626 0.79236 0.79766 0.82214 1.21264 1.20255 1.20233 1.20703 0.92919 0.93937 0.95658 1.21174 0.99371 0.94876 0.96454 1.21064 0.98987 0.99384 0.95281 1.20734 1.00405 0.94061 0.99391 1.20056 1.02197 0.95222 0.97086 1.20759 0.90612 0.96334 0.86723 1.92780 1.76298 1.85238 1.65525 1.21016 0.98440 0.99610 0.93640 0.95266 0.97216 0.89561 0.92847 0.85855 0.86814 0.87077 0.90572 0.90252 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.78 37.16 0.33 -2.86 15 2 C 0.07 1.74 2.48 -92.93 -0.23 1.51 15 3 H 0.03 0.93 7.88 -51.93 -0.41 0.52 15 4 C -0.51 -13.73 8.25 -34.44 -0.28 -14.01 15 5 H 0.06 1.52 7.61 -52.49 -0.40 1.12 15 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 15 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 15 8 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 15 9 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 12 C -0.03 -0.70 4.73 -104.63 -0.50 -1.19 15 13 C -0.10 -2.00 8.72 -39.59 -0.35 -2.34 15 14 C -0.13 -2.18 10.05 -39.59 -0.40 -2.57 15 15 C -0.13 -2.05 9.70 -39.59 -0.38 -2.43 15 16 C -0.15 -2.44 5.60 -104.62 -0.59 -3.03 15 17 C 0.11 1.49 7.67 36.01 0.28 1.77 15 18 F -0.22 -3.40 17.34 2.25 0.04 -3.36 15 19 C -0.11 -2.12 9.33 -39.59 -0.37 -2.49 15 20 H 0.03 0.66 7.37 -51.93 -0.38 0.28 15 21 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 15 22 H 0.09 2.27 6.07 -51.93 -0.32 1.95 15 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 24 H 0.12 2.46 7.56 -52.48 -0.40 2.06 15 25 H 0.11 1.59 8.06 -52.48 -0.42 1.16 15 26 H 0.11 1.46 8.06 -52.48 -0.42 1.03 15 27 H 0.08 0.82 8.09 -51.93 -0.42 0.40 15 28 H 0.08 0.94 8.09 -51.93 -0.42 0.52 15 29 H 0.12 2.16 7.95 -52.48 -0.42 1.75 15 LS Contribution 253.30 15.07 3.82 3.82 Total: -1.00 -28.43 253.30 -6.68 -35.12 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -3.56 Total: -1.11 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -2.58 Total: -26.05 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.63 Total: -24.40 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.04 Total: -3.36 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.43 -6.68 -35.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147510493.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.312 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds