Wall clock time and date at job start Mon Mar 30 2020 02:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00016 * 2 1 4 4 C 1.50707 * 109.47136 * 269.99971 * 3 2 1 5 5 H 1.08001 * 119.99814 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00156 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99890 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00179 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47165 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47082 * 120.00054 * 8 6 4 11 11 H 1.48502 * 109.47427 * 240.00390 * 8 6 4 12 12 C 1.39353 * 120.00127 * 179.97438 * 2 1 3 13 13 C 1.39596 * 120.07510 * 4.97590 * 12 2 1 14 14 C 1.38354 * 117.96279 * 179.74956 * 13 12 2 15 15 C 1.39585 * 117.96425 * 0.52980 * 14 13 12 16 16 N 1.39365 * 120.07408 * 179.73748 * 15 14 13 17 17 N 1.32274 * 119.84934 * 359.46167 * 15 14 13 18 18 N 1.28347 * 122.18805 * 0.27384 * 17 15 14 19 19 H 1.08999 * 109.47211 * 270.00460 * 1 2 3 20 20 H 1.09001 * 109.47291 * 30.00095 * 1 2 3 21 21 H 1.08996 * 109.47193 * 150.00122 * 1 2 3 22 22 H 1.08999 * 109.47613 * 29.99754 * 3 2 1 23 23 H 1.08998 * 109.47777 * 149.99967 * 3 2 1 24 24 H 0.97004 * 119.99993 * 179.97438 * 7 6 4 25 25 H 1.08000 * 121.01461 * 0.02827 * 13 12 2 26 26 H 1.08006 * 121.01781 * 180.29367 * 14 13 12 27 27 H 0.96999 * 119.99956 * 179.72706 * 16 15 14 28 28 H 0.97005 * 119.99935 * 359.72305 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0981 1.0957 -2.2418 6 6 3.1260 2.8779 -1.6729 7 7 3.5533 3.6181 -0.6732 8 14 3.4379 3.4168 -3.4340 9 1 2.8609 2.4163 -4.3674 10 1 2.7999 4.7371 -3.6680 11 1 4.9006 3.5256 -3.6667 12 6 2.1618 -1.2068 0.0005 13 6 1.4694 -2.4145 -0.1037 14 6 2.2051 -3.5862 -0.1041 15 6 3.5927 -3.4878 0.0112 16 7 4.3761 -4.6404 0.0211 17 7 4.1628 -2.2980 0.1054 18 7 3.4807 -1.2107 0.1003 19 1 -0.3633 0.0001 1.0276 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3633 -0.8900 -0.5138 22 1 1.6084 2.0284 0.5138 23 1 3.1499 1.1385 0.5138 24 1 4.0301 4.4440 -0.8505 25 1 0.3927 -2.4333 -0.1861 26 1 1.7203 -4.5477 -0.1871 27 1 5.3406 -4.5706 0.0972 28 1 3.9568 -5.5124 -0.0481 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159888364.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:49 Heat of formation + Delta-G solvation = 74.423384 kcal Electronic energy + Delta-G solvation = -13235.217003 eV Core-core repulsion = 10901.213931 eV Total energy + Delta-G solvation = -2334.003072 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.21518 -36.45698 -34.29686 -32.77957 -31.80553 -29.07442 -27.88493 -25.14773 -23.99466 -22.60741 -20.90847 -17.48569 -17.01730 -16.45070 -16.19321 -15.19995 -14.56208 -14.43883 -13.81197 -13.44684 -13.36117 -12.75216 -12.05722 -11.58131 -11.16125 -11.12756 -10.85338 -10.61425 -10.50805 -10.01303 -9.80533 -9.49591 -8.71810 -8.42983 -8.35253 -6.54324 -5.92767 -4.01233 1.45138 2.10603 3.33843 3.41493 3.45312 3.69798 4.07312 4.43667 4.51456 5.07022 5.10995 5.31586 5.37402 5.48194 5.74665 5.97848 6.12213 6.22494 6.30135 6.44842 7.14562 7.53111 7.59004 7.88419 7.93461 8.18759 8.31939 8.34091 9.02995 9.62739 9.78158 11.10724 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.037117 B = 0.008920 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.200323 B = 3138.381022 C = 3505.452246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.592 5.592 3 C 0.253 3.747 4 C -0.523 4.523 5 H 0.055 0.945 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.318 3.682 13 C -0.157 4.157 14 C -0.140 4.140 15 C 0.264 3.736 16 N -0.860 5.860 17 N -0.267 5.267 18 N -0.253 5.253 19 H 0.040 0.960 20 H 0.074 0.926 21 H 0.053 0.947 22 H 0.029 0.971 23 H 0.050 0.950 24 H 0.262 0.738 25 H 0.140 0.860 26 H 0.134 0.866 27 H 0.400 0.600 28 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.078 -13.568 1.438 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.306 5.306 3 C 0.133 3.867 4 C -0.562 4.562 5 H 0.073 0.927 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.209 1.209 12 C 0.074 3.926 13 C -0.192 4.192 14 C -0.173 4.173 15 C 0.019 3.981 16 N -0.410 5.410 17 N -0.116 5.116 18 N -0.103 5.103 19 H 0.058 0.942 20 H 0.093 0.907 21 H 0.072 0.928 22 H 0.047 0.953 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.157 0.843 26 H 0.152 0.848 27 H 0.229 0.771 28 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.757 -12.224 1.626 12.891 hybrid contribution -0.981 -0.827 -1.208 1.762 sum -4.738 -13.051 0.418 13.891 Atomic orbital electron populations 1.21544 0.80514 1.02275 1.00058 1.46825 1.04191 1.03808 1.75776 1.19315 0.92542 0.77618 0.97191 1.21519 1.36161 1.06047 0.92492 0.92653 1.24913 0.95469 0.96442 0.97185 1.69945 1.38557 1.14335 1.30521 0.86489 0.78070 0.78217 0.84896 1.19966 1.21066 1.20879 1.19964 0.90988 0.87212 0.94408 1.21693 1.01220 0.91457 1.04818 1.21434 0.92714 0.99110 1.04043 1.19826 0.89212 0.89539 0.99548 1.41737 1.08895 1.03951 1.86412 1.72774 1.30453 0.93595 1.14756 1.72967 1.04283 1.16800 1.16269 0.94154 0.90687 0.92807 0.95299 0.93228 0.92853 0.84263 0.84848 0.77097 0.77205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.67 10.30 59.85 0.62 2.29 15 2 N -0.59 -13.04 2.98 -182.88 -0.55 -13.58 15 3 C 0.25 6.72 5.23 -5.19 -0.03 6.69 15 4 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 15 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 15 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 15 7 N -0.89 -26.91 13.29 55.43 0.74 -26.18 15 8 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 15 9 H -0.27 -6.78 7.11 56.52 0.40 -6.37 15 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 15 11 H -0.28 -7.03 7.11 56.52 0.40 -6.63 15 12 C 0.32 6.83 7.46 -154.61 -1.15 5.67 15 13 C -0.16 -2.60 9.35 -39.03 -0.36 -2.97 15 14 C -0.14 -2.05 10.05 -39.04 -0.39 -2.45 15 15 C 0.26 4.40 7.86 -154.60 -1.21 3.18 15 16 N -0.86 -10.17 9.10 31.27 0.28 -9.89 15 17 N -0.27 -5.69 11.52 31.28 0.36 -5.33 15 18 N -0.25 -6.06 10.25 31.28 0.32 -5.74 15 19 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.07 1.27 8.07 -51.93 -0.42 0.85 15 21 H 0.05 0.74 6.03 -51.93 -0.31 0.43 15 22 H 0.03 0.78 8.07 -51.93 -0.42 0.36 15 23 H 0.05 1.46 7.32 -51.93 -0.38 1.08 15 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 25 H 0.14 1.84 6.14 -52.49 -0.32 1.52 15 26 H 0.13 1.39 8.06 -52.48 -0.42 0.97 15 27 H 0.40 4.44 8.96 -40.82 -0.37 4.07 15 28 H 0.40 3.30 8.84 -40.82 -0.36 2.94 15 LS Contribution 248.85 15.07 3.75 3.75 Total: -1.00 -33.75 248.85 -6.04 -39.79 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -2.97 Total: 1.19 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -2.96 Total: -1.25 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 1.16 Total: -60.72 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -33.75 -6.04 -39.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159888364.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.218 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds