Wall clock time and date at job start Mon Mar 30 2020 02:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47210 * 2 1 4 4 N 1.28445 * 125.21168 * 270.26466 * 3 2 1 5 5 C 1.30927 * 111.01718 * 180.16508 * 4 3 2 6 6 C 1.39524 * 107.94579 * 359.60868 * 5 4 3 7 7 C 1.36839 * 125.22113 * 89.99649 * 3 2 1 8 8 C 1.46292 * 126.92982 * 0.02562 * 7 3 2 9 9 O 1.21351 * 120.00290 * 359.97438 * 8 7 3 10 10 C 1.50705 * 119.99484 * 179.97438 * 8 7 3 11 11 C 1.50703 * 109.46757 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00303 * 359.97438 * 11 10 8 13 13 C 1.37877 * 119.99792 * 179.97438 * 11 10 8 14 14 N 1.31516 * 120.00111 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99874 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46989 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46782 * 120.00133 * 15 13 11 18 18 H 1.48502 * 109.47054 * 240.00070 * 15 13 11 19 19 H 1.09001 * 109.47135 * 300.00579 * 1 2 3 20 20 H 1.09000 * 109.47051 * 59.99849 * 1 2 3 21 21 H 1.08994 * 109.47549 * 180.02562 * 1 2 3 22 22 H 1.08993 * 109.47416 * 239.99504 * 2 1 3 23 23 H 1.09000 * 109.46664 * 119.99478 * 2 1 3 24 24 H 1.08002 * 126.02964 * 179.87889 * 5 4 3 25 25 H 1.07999 * 127.33010 * 180.25123 * 6 5 4 26 26 H 1.08996 * 109.47006 * 299.99238 * 10 8 7 27 27 H 1.09004 * 109.47436 * 59.99827 * 10 8 7 28 28 H 0.97001 * 119.99670 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2607 2.0811 -1.0494 5 6 2.6885 3.2761 -0.7284 6 6 2.7189 3.3622 0.6639 7 6 2.2814 2.1253 1.1179 8 6 2.1323 1.7024 2.5104 9 8 1.7369 0.5839 2.7659 10 6 2.4699 2.6559 3.6276 11 6 2.2309 1.9807 4.9535 12 1 1.8703 0.9631 4.9842 13 6 2.4728 2.6620 6.1276 14 7 2.9115 3.9013 6.0903 15 14 2.1759 1.8253 7.7712 16 1 1.6858 0.4425 7.5413 17 1 3.4459 1.7786 8.5393 18 1 1.1605 2.5896 8.5394 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 2.9647 4.0589 -1.4194 25 1 3.0185 4.2107 1.2612 26 1 3.5172 2.9480 3.5518 27 1 1.8392 3.5417 3.5524 28 1 3.0819 4.3804 6.9163 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160248816.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:40 Heat of formation + Delta-G solvation = 10.009528 kcal Electronic energy + Delta-G solvation = -13274.677264 eV Core-core repulsion = 10905.588246 eV Total energy + Delta-G solvation = -2369.089017 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.41915 -39.87308 -35.58529 -35.04603 -32.49806 -30.72567 -30.57512 -26.35653 -24.92127 -23.59516 -21.99820 -20.24911 -18.66216 -17.81467 -16.99857 -16.81161 -16.15982 -15.82981 -15.44188 -15.12977 -14.70783 -14.31750 -13.76853 -13.52686 -13.24804 -13.04675 -12.83982 -12.60697 -12.29066 -12.08963 -11.83560 -11.43474 -10.63051 -10.50515 -10.15771 -9.96401 -8.24963 -6.33593 0.05608 1.40330 1.41437 1.51755 1.56344 1.61753 2.04991 2.40512 3.10451 3.20024 3.57810 3.98275 4.11651 4.21769 4.28308 4.48379 4.66440 4.71114 4.88354 4.96700 5.07470 5.14535 5.26119 5.59672 5.70018 5.80536 6.06739 6.67056 6.79673 7.09430 7.35459 8.87149 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.046582 B = 0.008353 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.950569 B = 3351.229993 C = 3859.032773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.106 3.894 3 N -0.269 5.269 4 N -0.294 5.294 5 C -0.007 4.007 6 C -0.170 4.170 7 C -0.090 4.090 8 C 0.427 3.573 9 O -0.488 6.488 10 C -0.004 4.004 11 C -0.544 4.544 12 H 0.059 0.941 13 C 0.012 3.988 14 N -0.922 5.922 15 Si 0.963 3.037 16 H -0.272 1.272 17 H -0.274 1.274 18 H -0.274 1.274 19 H 0.037 0.963 20 H 0.067 0.933 21 H 0.106 0.894 22 H 0.121 0.879 23 H 0.097 0.903 24 H 0.224 0.776 25 H 0.175 0.825 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 -2.798 -11.794 12.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.013 4.013 3 N -0.058 5.058 4 N -0.128 5.128 5 C -0.182 4.182 6 C -0.199 4.199 7 C -0.215 4.215 8 C 0.306 3.694 9 O -0.364 6.364 10 C -0.042 4.042 11 C -0.582 4.582 12 H 0.077 0.923 13 C -0.187 4.187 14 N -0.562 5.562 15 Si 0.788 3.212 16 H -0.197 1.197 17 H -0.199 1.199 18 H -0.199 1.199 19 H 0.057 0.943 20 H 0.086 0.914 21 H 0.124 0.876 22 H 0.139 0.861 23 H 0.116 0.884 24 H 0.240 0.760 25 H 0.192 0.808 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.083 -4.097 -12.457 13.278 hybrid contribution 0.150 0.427 1.667 1.728 sum -1.932 -3.670 -10.790 11.560 Atomic orbital electron populations 1.22032 0.92703 1.04704 1.01840 1.22312 0.96935 0.76168 1.05931 1.46262 1.44849 1.12855 1.01859 1.73068 1.18491 1.06829 1.14383 1.24160 1.03856 0.95123 0.95018 1.22740 1.04205 0.96825 0.96104 1.22643 1.12558 0.95581 0.90678 1.22355 0.71560 0.87983 0.87461 1.90352 1.36688 1.22522 1.86821 1.19288 0.98751 0.94952 0.91182 1.21433 1.45186 1.00265 0.91309 0.92288 1.25774 0.94514 0.95492 1.02886 1.70039 1.45920 1.11227 1.29012 0.85428 0.78199 0.78622 0.78989 1.19694 1.19904 1.19907 0.94348 0.91409 0.87554 0.86052 0.88428 0.76006 0.80778 0.93157 0.93208 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 10.24 71.98 0.74 -3.14 15 2 C 0.11 2.96 6.51 86.38 0.56 3.52 15 3 N -0.27 -9.06 3.36 -335.02 -1.12 -10.19 15 4 N -0.29 -9.18 11.90 -57.20 -0.68 -9.86 15 5 C -0.01 -0.19 12.02 85.14 1.02 0.83 15 6 C -0.17 -5.50 10.56 22.72 0.24 -5.26 15 7 C -0.09 -3.41 6.94 40.60 0.28 -3.13 15 8 C 0.43 19.41 7.11 27.78 0.20 19.61 15 9 O -0.49 -23.58 13.80 -3.25 -0.04 -23.63 15 10 C 0.00 -0.21 4.96 29.10 0.14 -0.07 15 11 C -0.54 -31.21 8.92 25.60 0.23 -30.98 15 12 H 0.06 3.49 6.75 -2.91 -0.02 3.47 15 13 C 0.01 0.70 5.46 84.65 0.46 1.16 15 14 N -0.92 -53.25 13.29 21.45 0.28 -52.97 15 15 Si 0.96 44.29 29.54 68.60 2.03 46.32 15 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 15 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 15 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 19 H 0.04 1.17 8.14 -2.39 -0.02 1.16 15 20 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 21 H 0.11 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.12 2.65 8.14 -2.39 -0.02 2.63 15 23 H 0.10 3.06 6.32 -2.39 -0.02 3.05 15 24 H 0.22 4.00 8.06 -2.91 -0.02 3.97 15 25 H 0.17 5.12 8.06 -2.91 -0.02 5.10 15 26 H 0.05 2.61 8.14 -2.39 -0.02 2.59 15 27 H 0.05 2.59 8.14 -2.39 -0.02 2.57 15 28 H 0.27 14.45 8.31 -92.71 -0.77 13.68 15 Total: -1.00 -66.08 252.26 5.49 -60.59 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 1.15 Total: 7.18 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 3.88 Total: -17.45 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -1.52 Total: -73.01 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.04 Total: -23.63 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -66.08 5.49 -60.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160248816.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.604 kcal (2) G-P(sol) polarization free energy of solvation -66.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds