Wall clock time and date at job start Mon Mar 30 2020 02:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46494 * 120.00092 * 2 1 4 4 C 1.50701 * 109.46962 * 269.99437 * 3 2 1 5 5 H 1.07994 * 120.00281 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99889 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00122 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00038 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46995 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47526 * 120.00198 * 8 6 4 11 11 H 1.48503 * 109.47334 * 240.00178 * 8 6 4 12 12 C 1.38393 * 119.99659 * 179.97438 * 2 1 3 13 13 N 1.32498 * 119.17720 * 180.02562 * 12 2 1 14 14 C 1.32496 * 120.93315 * 180.02562 * 13 12 2 15 15 C 1.38122 * 119.28857 * 359.97438 * 14 13 12 16 16 C 1.39645 * 118.49472 * 359.97438 * 15 14 13 17 17 N 1.38530 * 120.48823 * 179.72392 * 16 15 14 18 18 N 1.32445 * 119.18123 * 0.02562 * 12 2 1 19 19 H 1.08997 * 109.47123 * 270.00107 * 1 2 3 20 20 H 1.09003 * 109.46659 * 30.00058 * 1 2 3 21 21 H 1.09000 * 109.46877 * 149.99843 * 1 2 3 22 22 H 1.09002 * 109.47350 * 29.99538 * 3 2 1 23 23 H 1.09004 * 109.47382 * 149.99703 * 3 2 1 24 24 H 0.97004 * 120.00086 * 180.02562 * 7 6 4 25 25 H 1.07997 * 120.35341 * 180.02562 * 14 13 12 26 26 H 1.07998 * 120.75523 * 179.97438 * 15 14 13 27 27 H 0.96996 * 119.99729 * 0.02562 * 17 16 15 28 28 H 0.97003 * 119.99806 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0977 1.0960 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.5534 3.6179 -0.6732 8 14 3.4370 3.4173 -3.4340 9 1 2.8602 2.4166 -4.3673 10 1 2.7991 4.7378 -3.6672 11 1 4.8995 3.5260 -3.6676 12 6 2.1570 -1.1986 0.0005 13 7 3.4818 -1.1796 0.0010 14 6 4.1791 -2.3063 0.0011 15 6 3.5103 -3.5148 0.0011 16 6 2.1139 -3.5035 0.0016 17 7 1.4014 -4.6915 -0.0041 18 7 1.4783 -2.3359 0.0005 19 1 -0.3633 0.0000 1.0276 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8900 -0.5139 22 1 1.6085 2.0284 0.5138 23 1 3.1500 1.1384 0.5139 24 1 4.0297 4.4442 -0.8505 25 1 5.2587 -2.2799 0.0019 26 1 4.0550 -4.4474 0.0007 27 1 1.8724 -5.5394 -0.0081 28 1 0.4315 -4.6753 -0.0041 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163393736.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:58 Heat of formation + Delta-G solvation = 63.836060 kcal Electronic energy + Delta-G solvation = -13293.921673 eV Core-core repulsion = 10959.459500 eV Total energy + Delta-G solvation = -2334.462173 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.08757 -36.26231 -34.59396 -32.69156 -31.54968 -29.43598 -27.68767 -25.45376 -23.28421 -22.78186 -20.69359 -17.55905 -17.17250 -16.38701 -15.38430 -14.99440 -14.60004 -14.52816 -14.37808 -13.22473 -13.06240 -12.93124 -12.05659 -11.45599 -11.30429 -11.14587 -10.79251 -10.54921 -10.14339 -10.01526 -9.84701 -9.33817 -8.41443 -8.22264 -8.15906 -6.89904 -5.96714 -4.02084 2.01132 2.19411 3.32979 3.40222 3.44138 3.52432 4.02866 4.48585 4.77648 5.08902 5.35428 5.52183 5.67450 5.83255 6.06975 6.18211 6.21997 6.45177 6.77807 7.09002 7.28156 7.48674 7.61157 7.89973 8.02531 8.10403 8.31072 8.51825 8.99171 9.29883 9.62169 11.09340 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.042689 B = 0.008716 C = 0.008146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.749102 B = 3211.880043 C = 3436.474330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.566 5.566 3 C 0.256 3.744 4 C -0.519 4.519 5 H 0.055 0.945 6 C 0.062 3.938 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.605 3.395 13 N -0.578 5.578 14 C 0.213 3.787 15 C -0.377 4.377 16 C 0.468 3.532 17 N -0.848 5.848 18 N -0.639 5.639 19 H 0.038 0.962 20 H 0.069 0.931 21 H 0.065 0.935 22 H 0.032 0.968 23 H 0.052 0.948 24 H 0.262 0.738 25 H 0.155 0.845 26 H 0.125 0.875 27 H 0.405 0.595 28 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 -13.101 1.704 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.278 5.278 3 C 0.136 3.864 4 C -0.558 4.558 5 H 0.074 0.926 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.209 1.209 12 C 0.249 3.751 13 N -0.303 5.303 14 C 0.045 3.955 15 C -0.409 4.409 16 C 0.220 3.780 17 N -0.393 5.393 18 N -0.375 5.375 19 H 0.057 0.943 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.173 0.827 26 H 0.143 0.857 27 H 0.235 0.765 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.399 -11.741 1.749 12.347 hybrid contribution 0.494 -0.844 -1.028 1.419 sum -2.905 -12.585 0.720 12.936 Atomic orbital electron populations 1.21444 0.79745 1.02348 1.00126 1.46775 1.05236 1.03275 1.72519 1.19381 0.92579 0.76922 0.97500 1.21474 1.35961 1.06027 0.92331 0.92640 1.24896 0.95501 0.96382 0.97218 1.69944 1.38725 1.14330 1.30509 0.86474 0.77979 0.78261 0.84865 1.19953 1.21052 1.20924 1.18988 0.85161 0.85155 0.85837 1.68174 1.06519 1.30505 1.25085 1.22567 0.99737 0.86531 0.86627 1.21527 0.93486 1.00409 1.25500 1.18081 0.88209 0.86009 0.85675 1.42050 1.09391 1.04347 1.83465 1.67268 1.40783 0.96969 1.32482 0.94319 0.91276 0.91595 0.95013 0.92987 0.92867 0.82747 0.85720 0.76499 0.77143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.07 10.44 59.85 0.62 2.69 15 2 N -0.57 -13.31 2.96 -185.33 -0.55 -13.86 15 3 C 0.26 6.85 5.16 -5.20 -0.03 6.82 15 4 C -0.52 -14.93 9.39 -34.44 -0.32 -15.26 15 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 15 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 7 N -0.90 -26.63 13.29 55.43 0.74 -25.90 15 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 15 9 H -0.27 -6.76 7.11 56.52 0.40 -6.36 15 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 15 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 12 C 0.60 13.87 8.18 -322.88 -2.64 11.23 15 13 N -0.58 -13.25 9.11 -14.02 -0.13 -13.38 15 14 C 0.21 3.86 11.28 -17.31 -0.20 3.66 15 15 C -0.38 -5.94 10.03 -39.10 -0.39 -6.33 15 16 C 0.47 7.78 7.82 -154.83 -1.21 6.57 15 17 N -0.85 -9.68 9.06 31.23 0.28 -9.40 15 18 N -0.64 -12.83 9.14 -13.17 -0.12 -12.95 15 19 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.07 1.30 8.07 -51.93 -0.42 0.88 15 21 H 0.07 1.20 7.33 -51.93 -0.38 0.82 15 22 H 0.03 0.87 8.07 -51.93 -0.42 0.45 15 23 H 0.05 1.51 7.33 -51.93 -0.38 1.13 15 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 25 H 0.16 2.25 8.06 -52.49 -0.42 1.82 15 26 H 0.12 1.51 8.06 -52.49 -0.42 1.09 15 27 H 0.41 3.29 8.84 -40.82 -0.36 2.93 15 28 H 0.40 4.14 8.95 -40.82 -0.37 3.77 15 LS Contribution 251.14 15.07 3.78 3.78 Total: -1.00 -33.12 251.14 -8.41 -41.53 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.14 Total: 2.02 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: -4.26 Total: 11.07 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: 0.22 Total: -75.48 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.12 -8.41 -41.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163393736.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.364 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds