Wall clock time and date at job start Mon Mar 30 2020 02:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46494 * 120.00092 * 2 1 4 4 C 1.50701 * 109.46962 * 269.99437 * 3 2 1 5 5 H 1.07994 * 120.00281 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99889 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00122 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00038 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46995 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47526 * 120.00198 * 8 6 4 11 11 H 1.48503 * 109.47334 * 240.00178 * 8 6 4 12 12 C 1.38393 * 119.99659 * 179.97438 * 2 1 3 13 13 N 1.32498 * 119.17720 * 180.02562 * 12 2 1 14 14 C 1.32496 * 120.93315 * 180.02562 * 13 12 2 15 15 C 1.38122 * 119.28857 * 359.97438 * 14 13 12 16 16 C 1.39645 * 118.49472 * 359.97438 * 15 14 13 17 17 N 1.38530 * 120.48823 * 179.72392 * 16 15 14 18 18 N 1.32445 * 119.18123 * 0.02562 * 12 2 1 19 19 H 1.08997 * 109.47123 * 270.00107 * 1 2 3 20 20 H 1.09003 * 109.46659 * 30.00058 * 1 2 3 21 21 H 1.09000 * 109.46877 * 149.99843 * 1 2 3 22 22 H 1.09002 * 109.47350 * 29.99538 * 3 2 1 23 23 H 1.09004 * 109.47382 * 149.99703 * 3 2 1 24 24 H 0.97004 * 120.00086 * 180.02562 * 7 6 4 25 25 H 1.07997 * 120.35341 * 180.02562 * 14 13 12 26 26 H 1.07998 * 120.75523 * 179.97438 * 15 14 13 27 27 H 0.96996 * 119.99729 * 0.02562 * 17 16 15 28 28 H 0.97003 * 119.99806 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0977 1.0960 -2.2417 6 6 3.1262 2.8778 -1.6728 7 7 3.5534 3.6179 -0.6732 8 14 3.4370 3.4173 -3.4340 9 1 2.8602 2.4166 -4.3673 10 1 2.7991 4.7378 -3.6672 11 1 4.8995 3.5260 -3.6676 12 6 2.1570 -1.1986 0.0005 13 7 3.4818 -1.1796 0.0010 14 6 4.1791 -2.3063 0.0011 15 6 3.5103 -3.5148 0.0011 16 6 2.1139 -3.5035 0.0016 17 7 1.4014 -4.6915 -0.0041 18 7 1.4783 -2.3359 0.0005 19 1 -0.3633 0.0000 1.0276 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8900 -0.5139 22 1 1.6085 2.0284 0.5138 23 1 3.1500 1.1384 0.5139 24 1 4.0297 4.4442 -0.8505 25 1 5.2587 -2.2799 0.0019 26 1 4.0550 -4.4474 0.0007 27 1 1.8724 -5.5394 -0.0081 28 1 0.4315 -4.6753 -0.0041 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163393736.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:58 Heat of formation + Delta-G solvation = 42.227059 kcal Electronic energy + Delta-G solvation = -13294.858709 eV Core-core repulsion = 10959.459500 eV Total energy + Delta-G solvation = -2335.399209 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.54201 -37.86493 -35.96456 -34.75181 -33.07018 -30.79493 -29.65683 -27.10964 -25.16733 -24.18883 -22.33785 -18.90171 -18.73628 -18.45560 -16.79264 -16.50141 -16.23409 -16.07696 -15.89737 -14.93812 -14.69298 -14.31713 -13.95289 -13.28500 -13.07873 -12.73110 -12.61455 -12.51901 -12.12255 -11.72294 -11.46236 -11.07172 -10.58902 -9.75086 -9.47877 -8.55916 -8.08930 -6.29043 0.57440 0.80280 1.38872 1.40242 1.52406 2.04541 2.42585 2.77562 3.13303 3.29142 3.75249 4.01518 4.41404 4.55408 4.69084 4.70221 4.84665 4.93758 5.10281 5.29848 5.54410 5.71950 5.99257 6.13149 6.29856 6.41629 6.66562 6.83543 7.14851 7.38465 7.80298 8.90996 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.042689 B = 0.008716 C = 0.008146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.749102 B = 3211.880043 C = 3436.474330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.587 5.587 3 C 0.277 3.723 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.013 3.987 7 N -0.926 5.926 8 Si 0.965 3.035 9 H -0.274 1.274 10 H -0.272 1.272 11 H -0.277 1.277 12 C 0.584 3.416 13 N -0.631 5.631 14 C 0.192 3.808 15 C -0.355 4.355 16 C 0.455 3.545 17 N -0.820 5.820 18 N -0.649 5.649 19 H 0.054 0.946 20 H 0.065 0.935 21 H 0.074 0.926 22 H 0.017 0.983 23 H 0.020 0.980 24 H 0.267 0.733 25 H 0.183 0.817 26 H 0.170 0.830 27 H 0.425 0.575 28 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.852 -15.088 0.884 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.301 5.301 3 C 0.156 3.844 4 C -0.570 4.570 5 H 0.060 0.940 6 C -0.186 4.186 7 N -0.566 5.566 8 Si 0.790 3.210 9 H -0.199 1.199 10 H -0.197 1.197 11 H -0.203 1.203 12 C 0.227 3.773 13 N -0.358 5.358 14 C 0.028 3.972 15 C -0.386 4.386 16 C 0.206 3.794 17 N -0.366 5.366 18 N -0.385 5.385 19 H 0.072 0.928 20 H 0.084 0.916 21 H 0.093 0.907 22 H 0.035 0.965 23 H 0.038 0.962 24 H 0.076 0.924 25 H 0.200 0.800 26 H 0.187 0.813 27 H 0.258 0.742 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.348 -13.848 0.935 14.277 hybrid contribution 0.495 -0.444 -0.722 0.982 sum -2.854 -14.292 0.213 14.575 Atomic orbital electron populations 1.21504 0.77816 1.02567 1.01190 1.46619 1.06372 1.02660 1.74454 1.18797 0.91264 0.78374 0.96002 1.21621 1.36339 1.06242 0.92816 0.93994 1.25728 0.95030 0.96296 1.01524 1.70048 1.39160 1.14773 1.32654 0.85417 0.77991 0.78089 0.79531 1.19912 1.19685 1.20307 1.19097 0.85520 0.85659 0.87008 1.68113 1.07127 1.33262 1.27252 1.23148 1.01097 0.86393 0.86536 1.21942 0.93293 1.01283 1.22123 1.18513 0.89233 0.86397 0.85221 1.41975 1.09898 1.03475 1.81298 1.67250 1.40955 0.97263 1.33055 0.92783 0.91591 0.90687 0.96511 0.96194 0.92445 0.80015 0.81285 0.74170 0.76154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.36 10.44 127.77 1.33 5.70 15 2 N -0.59 -28.37 2.96 -740.27 -2.19 -30.56 15 3 C 0.28 15.50 5.16 85.63 0.44 15.94 15 4 C -0.53 -31.41 9.39 25.60 0.24 -31.17 15 5 H 0.04 2.54 7.81 -2.91 -0.02 2.51 15 6 C 0.01 0.76 5.46 84.65 0.46 1.22 15 7 N -0.93 -56.05 13.29 21.45 0.28 -55.77 15 8 Si 0.96 45.65 29.54 68.60 2.03 47.67 15 9 H -0.27 -12.85 7.11 99.48 0.71 -12.14 15 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 15 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 12 C 0.58 27.08 8.18 261.51 2.14 29.22 15 13 N -0.63 -29.34 9.11 -198.26 -1.81 -31.15 15 14 C 0.19 6.72 11.28 84.57 0.95 7.67 15 15 C -0.36 -10.07 10.03 22.58 0.23 -9.85 15 16 C 0.45 13.94 7.82 133.19 1.04 14.98 15 17 N -0.82 -15.67 9.06 -55.12 -0.50 -16.17 15 18 N -0.65 -25.39 9.14 -195.57 -1.79 -27.18 15 19 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 20 H 0.07 2.53 8.07 -2.39 -0.02 2.51 15 21 H 0.07 2.72 7.33 -2.39 -0.02 2.70 15 22 H 0.02 0.97 8.07 -2.39 -0.02 0.95 15 23 H 0.02 1.23 7.33 -2.38 -0.02 1.21 15 24 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 25 H 0.18 5.00 8.06 -2.91 -0.02 4.97 15 26 H 0.17 3.21 8.06 -2.91 -0.02 3.18 15 27 H 0.42 4.93 8.84 -92.71 -0.82 4.11 15 28 H 0.41 7.04 8.95 -92.71 -0.83 6.21 15 Total: -1.00 -73.07 251.14 2.41 -70.67 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -0.46 Total: 8.76 kcal Atomic # 6 Polarization: 26.88 SS G_CDS: 6.84 Total: 33.72 kcal Atomic # 7 Polarization: -154.83 SS G_CDS: -6.00 Total: -160.82 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -73.07 2.41 -70.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163393736.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.895 kcal (2) G-P(sol) polarization free energy of solvation -73.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds