Wall clock time and date at job start Mon Mar 30 2020 02:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86798 * 120.00234 * 2 1 4 4 H 1.48497 * 109.47163 * 240.00106 * 3 2 1 5 5 H 1.48501 * 109.46843 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47124 * 120.00045 * 3 2 1 7 7 C 1.40263 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99470 * 180.02562 * 7 2 1 9 9 C 1.40549 * 120.00420 * 359.97438 * 7 2 1 10 10 N 1.33298 * 127.03975 * 359.97438 * 9 7 2 11 11 N 1.28801 * 107.71779 * 180.02562 * 10 9 7 12 12 N 1.28584 * 110.10887 * 0.02562 * 11 10 9 13 13 N 1.28998 * 109.45569 * 359.97438 * 12 11 10 14 14 C 1.46493 * 126.59882 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46871 * 90.02753 * 14 13 12 16 16 C 1.53781 * 113.61472 * 272.49544 * 15 14 13 17 17 C 1.53788 * 87.08154 * 220.01919 * 16 15 14 18 18 C 1.53781 * 113.61313 * 174.99703 * 15 14 13 19 19 H 0.96998 * 120.00118 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47185 * 210.02384 * 14 13 12 21 21 H 1.09002 * 109.47390 * 330.02891 * 14 13 12 22 22 H 1.08999 * 112.85242 * 43.80586 * 15 14 13 23 23 H 1.08999 * 113.61405 * 334.56873 * 16 15 14 24 24 H 1.08996 * 113.61205 * 105.46978 * 16 15 14 25 25 H 1.08999 * 113.61069 * 270.88252 * 17 16 15 26 26 H 1.09000 * 113.61422 * 139.98128 * 17 16 15 27 27 H 1.08997 * 113.61645 * 254.52785 * 18 15 14 28 28 H 1.09002 * 113.61828 * 25.35223 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6963 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0943 1.6963 1.2125 7 6 2.0077 -1.2148 -0.0005 8 1 3.0878 -1.2147 -0.0001 9 6 1.3049 -2.4320 -0.0005 10 7 -0.0180 -2.5953 0.0004 11 7 -0.2567 -3.8610 0.0006 12 7 0.8480 -4.5192 0.0003 13 7 1.8397 -3.6942 -0.0006 14 6 3.2633 -4.0397 -0.0006 15 6 3.7587 -4.1605 -1.4432 16 6 3.5698 -5.5635 -2.0439 17 6 4.9522 -5.3854 -2.6939 18 6 5.2732 -4.4018 -1.5562 19 1 -0.4850 0.8400 -0.0004 20 1 3.8263 -3.2604 0.5128 21 1 3.4065 -4.9902 0.5135 22 1 3.3955 -3.3571 -2.0841 23 1 3.5373 -6.3573 -1.2976 24 1 2.7535 -5.6240 -2.7636 25 1 4.9150 -4.9178 -3.6779 26 1 5.5627 -6.2882 -2.6760 27 1 5.8320 -3.5245 -1.8822 28 1 5.7067 -4.8767 -0.6760 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212708415.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:55 Heat of formation + Delta-G solvation = 111.782372 kcal Electronic energy + Delta-G solvation = -13533.514948 eV Core-core repulsion = 11201.131883 eV Total energy + Delta-G solvation = -2332.383065 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55659 -38.61311 -33.92628 -33.49780 -30.32659 -28.30952 -26.13976 -25.41378 -23.26344 -21.50758 -20.39088 -19.20766 -17.48605 -16.08964 -15.39222 -15.23752 -14.78016 -13.91687 -13.54081 -13.23866 -12.29738 -12.00179 -11.92162 -11.63438 -11.36558 -11.02436 -10.92774 -10.63099 -10.38264 -10.18646 -10.04941 -9.92826 -9.68950 -8.88215 -8.73912 -8.21089 -6.75785 -4.81718 2.87173 3.01213 3.03835 3.30456 3.71803 3.92590 4.26642 4.77026 4.87342 4.90257 5.02436 5.16563 5.54601 5.63573 5.82184 5.83248 5.87946 5.99592 6.12480 6.24055 6.40518 6.64626 6.69995 6.90637 7.10554 7.80460 7.84946 8.10975 8.58977 8.65504 10.18129 10.87496 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.030898 B = 0.011235 C = 0.008703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.996614 B = 2491.509885 C = 3216.627667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.079 3.921 3 Si 0.922 3.078 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.442 4.442 8 H 0.089 0.911 9 C 0.323 3.677 10 N -0.353 5.353 11 N -0.110 5.110 12 N -0.192 5.192 13 N -0.393 5.393 14 C 0.155 3.845 15 C -0.125 4.125 16 C -0.130 4.130 17 C -0.142 4.142 18 C -0.131 4.131 19 H 0.283 0.717 20 H 0.089 0.911 21 H 0.081 0.919 22 H 0.097 0.903 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.314 -2.339 -2.476 11.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.148 4.148 3 Si 0.745 3.255 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.485 4.485 8 H 0.107 0.893 9 C 0.073 3.927 10 N -0.212 5.212 11 N -0.105 5.105 12 N -0.179 5.179 13 N -0.198 5.198 14 C 0.031 3.969 15 C -0.144 4.144 16 C -0.167 4.167 17 C -0.179 4.179 18 C -0.169 4.169 19 H 0.094 0.906 20 H 0.107 0.893 21 H 0.100 0.900 22 H 0.115 0.885 23 H 0.100 0.900 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.860 -3.068 -2.460 10.616 hybrid contribution 1.367 1.258 -0.014 1.858 sum 11.228 -1.810 -2.474 11.639 Atomic orbital electron populations 1.69907 1.07243 1.29231 1.29243 1.25860 0.94947 1.00945 0.93065 0.86148 0.79788 0.79631 0.79888 1.18809 1.19964 1.18803 1.18329 0.93993 0.86964 1.49211 0.89275 1.22643 0.89171 0.86173 0.94746 1.76175 1.09977 1.05307 1.29739 1.77887 1.17873 1.00896 1.13861 1.78102 0.91688 1.20276 1.27832 1.48192 1.06540 1.05246 1.59797 1.21394 0.77191 1.01705 0.96634 1.22963 0.95882 0.98737 0.96845 1.22905 0.96856 0.96888 1.00066 1.22803 0.97639 0.99365 0.98133 1.22879 0.95588 0.99538 0.98912 0.90581 0.89296 0.90019 0.88504 0.90040 0.91749 0.90449 0.91712 0.91319 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.68 11.98 55.56 0.67 -19.02 15 2 C 0.08 1.95 5.50 -17.29 -0.10 1.86 15 3 Si 0.92 17.84 29.56 -169.99 -5.03 12.81 15 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 5 H -0.27 -5.23 7.11 56.52 0.40 -4.82 15 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 7 C -0.44 -11.33 9.06 -37.95 -0.34 -11.68 15 8 H 0.09 2.03 7.29 -52.48 -0.38 1.64 15 9 C 0.32 8.93 7.63 -155.55 -1.19 7.75 15 10 N -0.35 -10.73 10.71 31.20 0.33 -10.39 15 11 N -0.11 -3.23 13.38 60.35 0.81 -2.42 15 12 N -0.19 -5.10 13.25 60.35 0.80 -4.30 15 13 N -0.39 -9.59 3.42 -60.33 -0.21 -9.80 15 14 C 0.16 2.81 6.06 -4.04 -0.02 2.78 15 15 C -0.12 -1.98 3.96 -89.81 -0.36 -2.34 15 16 C -0.13 -1.89 7.63 -25.91 -0.20 -2.09 15 17 C -0.14 -1.67 8.08 -25.91 -0.21 -1.88 15 18 C -0.13 -1.57 7.64 -25.92 -0.20 -1.77 15 19 H 0.28 6.84 8.29 -40.82 -0.34 6.50 15 20 H 0.09 1.49 7.48 -51.93 -0.39 1.11 15 21 H 0.08 1.33 7.84 -51.93 -0.41 0.92 15 22 H 0.10 1.77 8.14 -51.93 -0.42 1.35 15 23 H 0.08 1.15 7.90 -51.93 -0.41 0.74 15 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.08 0.86 8.10 -51.93 -0.42 0.44 15 LS Contribution 246.82 15.07 3.72 3.72 Total: -1.00 -31.58 246.82 -4.77 -36.36 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -3.26 Total: 0.41 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.61 Total: -7.37 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 2.40 Total: -45.93 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.58 -4.77 -36.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212708415.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.140 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds