Wall clock time and date at job start Mon Mar 30 2020 02:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30647 * 1 3 3 Si 1.86798 * 120.00234 * 2 1 4 4 H 1.48497 * 109.47163 * 240.00106 * 3 2 1 5 5 H 1.48501 * 109.46843 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47124 * 120.00045 * 3 2 1 7 7 C 1.40263 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99470 * 180.02562 * 7 2 1 9 9 C 1.40549 * 120.00420 * 359.97438 * 7 2 1 10 10 N 1.33298 * 127.03975 * 359.97438 * 9 7 2 11 11 N 1.28801 * 107.71779 * 180.02562 * 10 9 7 12 12 N 1.28584 * 110.10887 * 0.02562 * 11 10 9 13 13 N 1.28998 * 109.45569 * 359.97438 * 12 11 10 14 14 C 1.46493 * 126.59882 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46871 * 90.02753 * 14 13 12 16 16 C 1.53781 * 113.61472 * 272.49544 * 15 14 13 17 17 C 1.53788 * 87.08154 * 220.01919 * 16 15 14 18 18 C 1.53781 * 113.61313 * 174.99703 * 15 14 13 19 19 H 0.96998 * 120.00118 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47185 * 210.02384 * 14 13 12 21 21 H 1.09002 * 109.47390 * 330.02891 * 14 13 12 22 22 H 1.08999 * 112.85242 * 43.80586 * 15 14 13 23 23 H 1.08999 * 113.61405 * 334.56873 * 16 15 14 24 24 H 1.08996 * 113.61205 * 105.46978 * 16 15 14 25 25 H 1.08999 * 113.61069 * 270.88252 * 17 16 15 26 26 H 1.09000 * 113.61422 * 139.98128 * 17 16 15 27 27 H 1.08997 * 113.61645 * 254.52785 * 18 15 14 28 28 H 1.09002 * 113.61828 * 25.35223 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6963 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0943 1.6963 1.2125 7 6 2.0077 -1.2148 -0.0005 8 1 3.0878 -1.2147 -0.0001 9 6 1.3049 -2.4320 -0.0005 10 7 -0.0180 -2.5953 0.0004 11 7 -0.2567 -3.8610 0.0006 12 7 0.8480 -4.5192 0.0003 13 7 1.8397 -3.6942 -0.0006 14 6 3.2633 -4.0397 -0.0006 15 6 3.7587 -4.1605 -1.4432 16 6 3.5698 -5.5635 -2.0439 17 6 4.9522 -5.3854 -2.6939 18 6 5.2732 -4.4018 -1.5562 19 1 -0.4850 0.8400 -0.0004 20 1 3.8263 -3.2604 0.5128 21 1 3.4065 -4.9902 0.5135 22 1 3.3955 -3.3571 -2.0841 23 1 3.5373 -6.3573 -1.2976 24 1 2.7535 -5.6240 -2.7636 25 1 4.9150 -4.9178 -3.6779 26 1 5.5627 -6.2882 -2.6760 27 1 5.8320 -3.5245 -1.8822 28 1 5.7067 -4.8767 -0.6760 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212708415.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:54 Heat of formation + Delta-G solvation = 90.991614 kcal Electronic energy + Delta-G solvation = -13534.416503 eV Core-core repulsion = 11201.131883 eV Total energy + Delta-G solvation = -2333.284620 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.60639 -39.78005 -35.85624 -35.33583 -32.38980 -29.90057 -28.09760 -26.47939 -24.69079 -23.55951 -22.21240 -20.33444 -19.43441 -17.86348 -17.06205 -16.82703 -16.24069 -15.35301 -15.28086 -14.69975 -13.77684 -13.32306 -13.30328 -13.19396 -12.96293 -12.70095 -12.48291 -12.05782 -12.03137 -11.82174 -11.50287 -11.36903 -11.14067 -10.87657 -10.68567 -10.25077 -8.63093 -6.83967 1.07923 1.43679 1.58003 1.60042 2.02986 2.20718 2.26238 3.18191 3.59889 3.75403 3.77745 3.94649 4.17110 4.33395 4.51626 4.68598 4.84252 4.85877 4.91883 4.95963 5.08547 5.14587 5.17369 5.30956 5.57702 5.79665 5.86006 6.14116 6.63910 6.70820 8.34230 8.75468 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.030898 B = 0.011235 C = 0.008703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.996614 B = 2491.509885 C = 3216.627667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.030 3.970 3 Si 1.009 2.991 4 H -0.251 1.251 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.456 4.456 8 H 0.116 0.884 9 C 0.296 3.704 10 N -0.398 5.398 11 N -0.145 5.145 12 N -0.184 5.184 13 N -0.386 5.386 14 C 0.142 3.858 15 C -0.134 4.134 16 C -0.137 4.137 17 C -0.129 4.129 18 C -0.112 4.112 19 H 0.290 0.710 20 H 0.104 0.896 21 H 0.102 0.898 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.479 -1.656 -2.488 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.193 4.193 3 Si 0.827 3.173 4 H -0.174 1.174 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.498 4.498 8 H 0.134 0.866 9 C 0.046 3.954 10 N -0.258 5.258 11 N -0.140 5.140 12 N -0.172 5.172 13 N -0.191 5.191 14 C 0.021 3.979 15 C -0.154 4.154 16 C -0.175 4.175 17 C -0.166 4.166 18 C -0.150 4.150 19 H 0.101 0.899 20 H 0.123 0.877 21 H 0.121 0.879 22 H 0.085 0.915 23 H 0.106 0.894 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.048 -2.424 -2.475 13.500 hybrid contribution 0.401 0.970 -0.010 1.049 sum 13.449 -1.455 -2.485 13.753 Atomic orbital electron populations 1.70042 1.09641 1.30919 1.30004 1.27120 0.95681 1.05053 0.91432 0.84853 0.78189 0.73521 0.80710 1.17446 1.19662 1.17301 1.18956 0.95369 0.86812 1.48681 0.86633 1.23062 0.88946 0.87832 0.95520 1.76053 1.12225 1.05855 1.31701 1.77816 1.19108 1.01008 1.16018 1.77921 0.91975 1.20738 1.26531 1.48539 1.08190 1.04051 1.58354 1.21972 0.73920 1.03232 0.98801 1.22959 0.99307 0.98448 0.94642 1.22976 0.98122 0.96307 1.00059 1.22754 0.95484 1.00349 0.97997 1.22864 0.92195 1.00132 0.99802 0.89921 0.87738 0.87943 0.91516 0.89394 0.94285 0.90291 0.89260 0.90076 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -42.71 11.98 21.88 0.26 -42.45 15 2 C 0.03 1.46 5.50 85.36 0.47 1.93 15 3 Si 1.01 35.23 29.56 68.60 2.03 37.26 15 4 H -0.25 -8.20 7.11 99.48 0.71 -7.49 15 5 H -0.27 -9.28 7.11 99.48 0.71 -8.57 15 6 H -0.25 -8.11 7.11 99.48 0.71 -7.40 15 7 C -0.46 -23.17 9.06 23.33 0.21 -22.96 15 8 H 0.12 5.04 7.29 -2.91 -0.02 5.02 15 9 C 0.30 16.65 7.63 133.78 1.02 17.67 15 10 N -0.40 -25.09 10.71 -55.19 -0.59 -25.68 15 11 N -0.14 -8.77 13.38 37.02 0.50 -8.27 15 12 N -0.18 -9.96 13.25 37.02 0.49 -9.47 15 13 N -0.39 -18.90 3.42 -344.79 -1.18 -20.08 15 14 C 0.14 4.94 6.06 86.38 0.52 5.46 15 15 C -0.13 -4.06 3.96 -10.27 -0.04 -4.10 15 16 C -0.14 -3.83 7.63 31.12 0.24 -3.59 15 17 C -0.13 -2.62 8.08 31.12 0.25 -2.37 15 18 C -0.11 -2.28 7.64 31.12 0.24 -2.04 15 19 H 0.29 14.23 8.29 -92.71 -0.77 13.47 15 20 H 0.10 3.27 7.48 -2.39 -0.02 3.26 15 21 H 0.10 3.11 7.84 -2.39 -0.02 3.09 15 22 H 0.07 2.44 8.14 -2.39 -0.02 2.42 15 23 H 0.09 2.32 7.90 -2.39 -0.02 2.30 15 24 H 0.04 1.26 8.14 -2.39 -0.02 1.24 15 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 15 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 15 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 15 28 H 0.10 1.70 8.10 -2.39 -0.02 1.68 15 Total: -1.00 -70.80 246.82 5.58 -65.22 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.16 Total: 13.48 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 2.91 Total: -10.01 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -0.52 Total: -105.95 kcal Atomic # 14 Polarization: 35.23 SS G_CDS: 2.03 Total: 37.26 kcal Total: -70.80 5.58 -65.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212708415.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.215 kcal (2) G-P(sol) polarization free energy of solvation -70.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds