Wall clock time and date at job start Mon Mar 30 2020 02:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46797 * 2 1 4 4 F 1.39893 * 109.47391 * 120.00671 * 2 1 3 5 5 C 1.52999 * 109.47060 * 240.01003 * 2 1 3 6 6 C 1.50703 * 109.47124 * 175.00082 * 5 2 1 7 7 C 1.38633 * 119.75264 * 89.99711 * 6 5 2 8 8 C 1.37617 * 120.24769 * 179.97438 * 7 6 5 9 9 C 1.40712 * 119.74610 * 0.28046 * 8 7 6 10 10 C 1.41400 * 120.24377 * 179.70276 * 9 8 7 11 11 H 1.07999 * 120.00087 * 24.27936 * 10 9 8 12 12 C 1.39947 * 119.99564 * 204.28785 * 10 9 8 13 13 N 1.30821 * 120.00278 * 17.72524 * 12 10 9 14 14 Si 1.86794 * 119.99656 * 197.71822 * 12 10 9 15 15 H 1.48501 * 109.47529 * 60.00194 * 14 12 10 16 16 H 1.48506 * 109.47057 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47379 * 300.00118 * 14 12 10 18 18 C 1.40721 * 119.51082 * 359.46549 * 9 8 7 19 19 C 1.37617 * 119.74346 * 0.50994 * 18 9 8 20 20 H 1.08996 * 109.46958 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47205 * 299.99489 * 1 2 3 22 22 H 1.09001 * 109.46918 * 59.99378 * 1 2 3 23 23 H 1.09002 * 109.47525 * 54.99744 * 5 2 1 24 24 H 1.09004 * 109.47290 * 294.99484 * 5 2 1 25 25 H 1.07997 * 119.87048 * 359.95699 * 7 6 5 26 26 H 1.08001 * 120.12635 * 179.97438 * 8 7 6 27 27 H 0.96999 * 120.00115 * 179.97438 * 13 12 10 28 28 H 1.07999 * 120.12797 * 180.25726 * 18 9 8 29 29 H 1.08001 * 119.87226 * 179.74551 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6596 1.1421 5 6 2.0400 -0.7210 -1.2494 6 6 3.5420 -0.6147 -1.3128 7 6 4.3265 -1.5871 -0.7121 8 6 5.6989 -1.5004 -0.7643 9 6 6.3053 -0.4164 -1.4255 10 6 7.7145 -0.3135 -1.4801 11 1 8.3248 -1.1994 -1.3842 12 6 8.3184 0.9363 -1.6581 13 7 7.6378 2.0301 -1.4305 14 14 10.0965 1.0428 -2.2206 15 1 10.2373 0.3845 -3.5443 16 1 10.4961 2.4688 -2.3314 17 1 10.9700 0.3597 -1.2327 18 6 5.4990 0.5619 -2.0363 19 6 4.1286 0.4546 -1.9720 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.6054 -0.2614 -2.1371 24 1 1.7517 -1.7714 -1.2059 25 1 3.8588 -2.4156 -0.2011 26 1 6.3082 -2.2588 -0.2953 27 1 8.0565 2.8964 -1.5536 28 1 5.9540 1.3959 -2.5500 29 1 3.5077 1.2064 -2.4365 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212709071.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:25 Heat of formation + Delta-G solvation = -56.551698 kcal Electronic energy + Delta-G solvation = -13062.184653 eV Core-core repulsion = 10670.289362 eV Total energy + Delta-G solvation = -2391.895290 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.03763 -37.62181 -34.33756 -32.87117 -30.09430 -29.23033 -27.07169 -24.01983 -21.31846 -20.96971 -19.74752 -17.26716 -16.06349 -15.30105 -14.96412 -14.72377 -13.96939 -13.52062 -13.44201 -12.59771 -12.34870 -12.16322 -11.92190 -11.64816 -11.54314 -11.13286 -11.02056 -10.80622 -10.51175 -10.29701 -10.12627 -9.50951 -9.35043 -9.08843 -7.42669 -7.25489 -6.74363 -4.32478 2.78036 3.06860 3.09612 3.10977 3.22022 3.94240 4.58640 4.99958 5.14137 5.22190 5.46155 5.72079 5.74484 5.97903 6.00696 6.23882 6.34755 6.42266 6.46282 6.57118 6.97826 7.09897 7.31908 7.40455 7.64431 7.90004 8.07646 8.14826 8.33046 8.66234 8.91904 9.00474 10.20420 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.066345 B = 0.007231 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.934696 B = 3871.305038 C = 3998.080390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.078 0.922 4 F -0.215 7.215 5 C -0.079 4.079 6 C -0.220 4.220 7 C -0.076 4.076 8 C -0.227 4.227 9 C 0.111 3.889 10 C -0.464 4.464 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.794 5.794 14 Si 0.908 3.092 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.167 4.167 19 C -0.097 4.097 20 H 0.062 0.938 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.280 0.720 28 H 0.117 0.883 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 -0.736 -0.483 7.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.054 3.946 3 H 0.096 0.904 4 F -0.196 7.196 5 C -0.116 4.116 6 C -0.221 4.221 7 C -0.094 4.094 8 C -0.247 4.247 9 C 0.109 3.891 10 C -0.494 4.494 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.419 5.419 14 Si 0.732 3.268 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.190 1.190 18 C -0.186 4.186 19 C -0.115 4.115 20 H 0.081 0.919 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.135 0.865 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.238 -0.484 -0.442 7.268 hybrid contribution 0.850 0.173 -0.089 0.872 sum -6.388 -0.311 -0.531 6.418 Atomic orbital electron populations 1.22410 0.95597 1.02900 1.02708 1.21646 0.92955 0.96766 0.83235 0.90396 1.92781 1.90407 1.83377 1.52999 1.20823 0.94977 1.00021 0.95821 1.18920 0.92328 0.99945 1.10957 1.20374 0.93770 0.97031 0.98239 1.20972 0.93548 1.02547 1.07618 1.17624 0.93328 0.90431 0.87745 1.19573 0.91929 0.93700 1.44187 0.90512 1.25906 1.00390 0.95282 0.92555 1.69822 1.38559 0.98962 1.34596 0.86376 0.82099 0.77901 0.80374 1.18838 1.20359 1.19018 1.21294 0.91840 1.01832 1.03622 1.20527 0.95098 0.96248 0.99676 0.91863 0.92084 0.91086 0.91253 0.91901 0.89510 0.89079 0.90866 0.86480 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 9.65 37.16 0.36 -1.81 15 2 C 0.09 1.47 3.95 -26.73 -0.11 1.37 15 3 H 0.08 1.30 8.14 -51.93 -0.42 0.87 15 4 F -0.21 -4.14 16.76 2.25 0.04 -4.11 15 5 C -0.08 -1.37 5.11 -27.88 -0.14 -1.51 15 6 C -0.22 -4.88 5.02 -104.33 -0.52 -5.41 15 7 C -0.08 -1.78 9.50 -39.66 -0.38 -2.16 15 8 C -0.23 -5.81 9.80 -38.87 -0.38 -6.19 15 9 C 0.11 3.04 5.57 -106.82 -0.60 2.44 15 10 C -0.46 -12.59 9.05 -37.74 -0.34 -12.93 15 11 H 0.08 2.00 7.91 -52.49 -0.41 1.58 15 12 C 0.08 1.95 5.14 -17.34 -0.09 1.86 15 13 N -0.79 -20.82 10.95 55.55 0.61 -20.21 15 14 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 15 15 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 16 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 18 C -0.17 -4.40 8.70 -38.87 -0.34 -4.73 15 19 C -0.10 -2.28 9.67 -39.66 -0.38 -2.66 15 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.06 0.69 8.14 -51.93 -0.42 0.26 15 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 23 H 0.07 1.07 8.08 -51.93 -0.42 0.65 15 24 H 0.06 1.04 8.08 -51.93 -0.42 0.62 15 25 H 0.09 1.86 8.06 -52.49 -0.42 1.44 15 26 H 0.09 2.20 8.06 -52.49 -0.42 1.78 15 27 H 0.28 6.69 8.30 -40.82 -0.34 6.35 15 28 H 0.12 3.17 6.16 -52.49 -0.32 2.85 15 29 H 0.09 1.78 8.06 -52.49 -0.42 1.36 15 LS Contribution 255.06 15.07 3.84 3.84 Total: -1.00 -28.16 255.06 -7.13 -35.30 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.67 Total: 3.08 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: -2.92 Total: -31.74 kcal Atomic # 7 Polarization: -20.82 SS G_CDS: 0.61 Total: -20.21 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.16 -7.13 -35.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212709071.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.257 kcal (2) G-P(sol) polarization free energy of solvation -28.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds