Wall clock time and date at job start Mon Mar 30 2020 02:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46797 * 2 1 4 4 F 1.39893 * 109.47391 * 120.00671 * 2 1 3 5 5 C 1.52999 * 109.47060 * 240.01003 * 2 1 3 6 6 C 1.50703 * 109.47124 * 175.00082 * 5 2 1 7 7 C 1.38633 * 119.75264 * 89.99711 * 6 5 2 8 8 C 1.37617 * 120.24769 * 179.97438 * 7 6 5 9 9 C 1.40712 * 119.74610 * 0.28046 * 8 7 6 10 10 C 1.41400 * 120.24377 * 179.70276 * 9 8 7 11 11 H 1.07999 * 120.00087 * 24.27936 * 10 9 8 12 12 C 1.39947 * 119.99564 * 204.28785 * 10 9 8 13 13 N 1.30821 * 120.00278 * 17.72524 * 12 10 9 14 14 Si 1.86794 * 119.99656 * 197.71822 * 12 10 9 15 15 H 1.48501 * 109.47529 * 60.00194 * 14 12 10 16 16 H 1.48506 * 109.47057 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47379 * 300.00118 * 14 12 10 18 18 C 1.40721 * 119.51082 * 359.46549 * 9 8 7 19 19 C 1.37617 * 119.74346 * 0.50994 * 18 9 8 20 20 H 1.08996 * 109.46958 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47205 * 299.99489 * 1 2 3 22 22 H 1.09001 * 109.46918 * 59.99378 * 1 2 3 23 23 H 1.09002 * 109.47525 * 54.99744 * 5 2 1 24 24 H 1.09004 * 109.47290 * 294.99484 * 5 2 1 25 25 H 1.07997 * 119.87048 * 359.95699 * 7 6 5 26 26 H 1.08001 * 120.12635 * 179.97438 * 8 7 6 27 27 H 0.96999 * 120.00115 * 179.97438 * 13 12 10 28 28 H 1.07999 * 120.12797 * 180.25726 * 18 9 8 29 29 H 1.08001 * 119.87226 * 179.74551 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6596 1.1421 5 6 2.0400 -0.7210 -1.2494 6 6 3.5420 -0.6147 -1.3128 7 6 4.3265 -1.5871 -0.7121 8 6 5.6989 -1.5004 -0.7643 9 6 6.3053 -0.4164 -1.4255 10 6 7.7145 -0.3135 -1.4801 11 1 8.3248 -1.1994 -1.3842 12 6 8.3184 0.9363 -1.6581 13 7 7.6378 2.0301 -1.4305 14 14 10.0965 1.0428 -2.2206 15 1 10.2373 0.3845 -3.5443 16 1 10.4961 2.4688 -2.3314 17 1 10.9700 0.3597 -1.2327 18 6 5.4990 0.5619 -2.0363 19 6 4.1286 0.4546 -1.9720 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.6054 -0.2614 -2.1371 24 1 1.7517 -1.7714 -1.2059 25 1 3.8588 -2.4156 -0.2011 26 1 6.3082 -2.2588 -0.2953 27 1 8.0565 2.8964 -1.5536 28 1 5.9540 1.3959 -2.5500 29 1 3.5077 1.2064 -2.4365 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212709071.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:25 Heat of formation + Delta-G solvation = -70.564645 kcal Electronic energy + Delta-G solvation = -13062.792300 eV Core-core repulsion = 10670.289362 eV Total energy + Delta-G solvation = -2392.502937 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.44006 -39.49449 -36.07904 -34.43671 -31.74776 -31.14413 -28.68741 -25.72357 -22.90193 -22.72880 -21.47438 -19.22538 -17.47624 -17.07560 -16.51373 -16.06367 -15.71531 -15.32338 -15.15294 -14.27351 -13.81659 -13.59920 -13.47360 -13.14455 -13.03282 -12.77563 -12.70221 -12.43673 -12.16207 -11.89518 -11.53879 -11.29671 -11.22749 -10.96103 -9.36481 -9.18485 -8.64419 -6.33853 0.95254 1.13808 1.36912 1.48255 1.53123 2.20343 2.70122 3.65142 3.86584 4.00108 4.02166 4.22100 4.44490 4.48786 4.70258 4.71674 4.89921 5.00539 5.08929 5.14118 5.24721 5.26463 5.41489 5.48083 5.71081 5.98840 6.09625 6.24055 6.39542 6.69809 6.93686 7.03659 8.32913 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.066345 B = 0.007231 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.934696 B = 3871.305038 C = 3998.080390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.083 3.917 3 H 0.071 0.929 4 F -0.235 7.235 5 C -0.077 4.077 6 C -0.210 4.210 7 C -0.084 4.084 8 C -0.248 4.248 9 C 0.077 3.923 10 C -0.506 4.506 11 H 0.073 0.927 12 C 0.035 3.965 13 N -0.826 5.826 14 Si 0.984 3.016 15 H -0.260 1.260 16 H -0.265 1.265 17 H -0.261 1.261 18 C -0.191 4.191 19 C -0.101 4.101 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.075 0.925 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.288 0.712 28 H 0.102 0.898 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.632 -0.588 -0.892 8.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.046 3.954 3 H 0.089 0.911 4 F -0.216 7.216 5 C -0.114 4.114 6 C -0.211 4.211 7 C -0.103 4.103 8 C -0.268 4.268 9 C 0.075 3.925 10 C -0.536 4.536 11 H 0.091 0.909 12 C -0.179 4.179 13 N -0.452 5.452 14 Si 0.804 3.196 15 H -0.184 1.184 16 H -0.190 1.190 17 H -0.185 1.185 18 C -0.211 4.211 19 C -0.119 4.119 20 H 0.090 0.910 21 H 0.088 0.912 22 H 0.112 0.888 23 H 0.116 0.884 24 H 0.094 0.906 25 H 0.126 0.874 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.613 -0.343 -0.845 8.661 hybrid contribution 1.124 0.098 0.067 1.130 sum -7.489 -0.245 -0.777 7.533 Atomic orbital electron populations 1.22336 0.91832 1.04033 1.04373 1.21839 0.95925 0.95858 0.81734 0.91075 1.92748 1.90966 1.83735 1.54197 1.20907 0.91252 1.01548 0.97726 1.19472 0.95305 0.98178 1.08101 1.20697 0.93140 0.98127 0.98290 1.21177 0.94890 1.02539 1.08146 1.17979 0.94088 0.91574 0.88884 1.19826 0.92367 0.94593 1.46777 0.90905 1.26763 1.05018 0.94307 0.91832 1.69870 1.40649 0.99620 1.35097 0.85241 0.76130 0.78466 0.79773 1.18436 1.18959 1.18491 1.21314 0.93311 1.01738 1.04720 1.20863 0.94302 0.97269 0.99440 0.91003 0.91193 0.88759 0.88430 0.90587 0.87438 0.88981 0.90098 0.88019 0.86745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 9.65 71.98 0.69 -2.72 15 2 C 0.08 2.45 3.95 30.60 0.12 2.57 15 3 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 4 F -0.24 -8.65 16.76 44.97 0.75 -7.89 15 5 C -0.08 -2.41 5.11 29.85 0.15 -2.26 15 6 C -0.21 -8.95 5.02 -19.67 -0.10 -9.05 15 7 C -0.08 -3.92 9.50 22.22 0.21 -3.70 15 8 C -0.25 -12.98 9.80 22.73 0.22 -12.76 15 9 C 0.08 4.35 5.57 -21.29 -0.12 4.23 15 10 C -0.51 -28.51 9.05 23.46 0.21 -28.30 15 11 H 0.07 3.97 7.91 -2.91 -0.02 3.94 15 12 C 0.04 1.84 5.14 85.26 0.44 2.28 15 13 N -0.83 -44.35 10.95 21.83 0.24 -44.11 15 14 Si 0.98 39.13 29.59 68.60 2.03 41.16 15 15 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 16 H -0.27 -9.88 7.11 99.48 0.71 -9.17 15 17 H -0.26 -10.07 7.11 99.48 0.71 -9.36 15 18 C -0.19 -10.35 8.70 22.73 0.20 -10.15 15 19 C -0.10 -4.64 9.67 22.22 0.21 -4.43 15 20 H 0.07 1.36 8.14 -2.39 -0.02 1.34 15 21 H 0.07 1.32 8.14 -2.39 -0.02 1.30 15 22 H 0.09 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.10 2.55 8.08 -2.39 -0.02 2.53 15 24 H 0.08 2.22 8.08 -2.38 -0.02 2.20 15 25 H 0.11 4.46 8.06 -2.91 -0.02 4.43 15 26 H 0.09 4.62 8.06 -2.91 -0.02 4.59 15 27 H 0.29 13.94 8.30 -92.71 -0.77 13.17 15 28 H 0.10 5.71 6.16 -2.91 -0.02 5.69 15 29 H 0.11 4.53 8.06 -2.91 -0.02 4.50 15 Total: -1.00 -62.09 255.06 6.39 -55.69 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 1.12 Total: 19.43 kcal Atomic # 6 Polarization: -66.52 SS G_CDS: 2.25 Total: -64.28 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.24 Total: -44.11 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 0.75 Total: -7.89 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -62.09 6.39 -55.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212709071.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.872 kcal (2) G-P(sol) polarization free energy of solvation -62.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds