Wall clock time and date at job start Mon Mar 30 2020 02:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46733 * 2 1 4 4 F 1.39902 * 109.47122 * 240.00476 * 2 1 3 5 5 C 1.52993 * 109.47175 * 119.99981 * 2 1 3 6 6 C 1.50704 * 109.47245 * 185.00000 * 5 2 1 7 7 C 1.37640 * 120.12742 * 265.02827 * 6 5 2 8 8 C 1.38615 * 120.24508 * 179.97438 * 7 6 5 9 9 C 1.38653 * 120.50505 * 0.03574 * 8 7 6 10 10 C 1.37602 * 120.24670 * 359.68187 * 9 8 7 11 11 C 1.40697 * 120.12905 * 85.00036 * 6 5 2 12 12 C 1.41400 * 120.24037 * 0.02631 * 11 6 5 13 13 H 1.07992 * 120.00124 * 26.26420 * 12 11 6 14 14 C 1.39945 * 119.99706 * 206.26585 * 12 11 6 15 15 N 1.30820 * 120.00260 * 16.45524 * 14 12 11 16 16 Si 1.86807 * 119.99989 * 196.45786 * 14 12 11 17 17 H 1.48496 * 109.46874 * 265.18837 * 16 14 12 18 18 H 1.48507 * 109.46845 * 25.18309 * 16 14 12 19 19 H 1.48495 * 109.47192 * 145.18243 * 16 14 12 20 20 H 1.09005 * 109.47080 * 299.99657 * 1 2 3 21 21 H 1.08992 * 109.47474 * 60.00073 * 1 2 3 22 22 H 1.09001 * 109.46733 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47381 * 65.00141 * 5 2 1 24 24 H 1.08994 * 109.47494 * 304.99811 * 5 2 1 25 25 H 1.07998 * 119.87799 * 359.96989 * 7 6 5 26 26 H 1.08003 * 119.74331 * 180.02562 * 8 7 6 27 27 H 1.07998 * 119.87893 * 179.97438 * 9 8 7 28 28 H 1.08000 * 120.13026 * 180.30283 * 10 9 8 29 29 H 0.97004 * 120.00012 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6594 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 3.5420 -0.6149 1.3127 7 6 4.3281 -1.6262 0.8090 8 6 5.7098 -1.5307 0.8657 9 6 6.3159 -0.4185 1.4296 10 6 5.5498 0.6073 1.9340 11 6 4.1461 0.5189 1.8865 12 6 3.3486 1.5641 2.4070 13 1 2.3492 1.3565 2.7596 14 6 3.8545 2.8676 2.4653 15 7 4.9096 3.1918 1.7630 16 14 3.0232 4.1447 3.5458 17 1 2.0600 4.9297 2.7327 18 1 2.2996 3.4639 4.6496 19 1 4.0491 5.0556 4.1142 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.7517 -1.7714 1.2056 24 1 1.6055 -0.2617 2.1369 25 1 3.8667 -2.4975 0.3681 26 1 6.3188 -2.3289 0.4676 27 1 7.3932 -0.3548 1.4688 28 1 6.0239 1.4750 2.3684 29 1 5.2604 4.0952 1.8037 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212709246.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:26 Heat of formation + Delta-G solvation = -54.967343 kcal Electronic energy + Delta-G solvation = -13500.161804 eV Core-core repulsion = 11108.335217 eV Total energy + Delta-G solvation = -2391.826588 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.78628 -37.70002 -33.62757 -33.35655 -30.01916 -29.40131 -26.05706 -24.79445 -21.16080 -20.93545 -19.44422 -17.16538 -15.78032 -15.41965 -14.75662 -14.45305 -14.15408 -13.48995 -13.33572 -12.60198 -12.30783 -11.98125 -11.66397 -11.50861 -11.29550 -11.13773 -11.02443 -10.70977 -10.46157 -10.22134 -9.94921 -9.44365 -9.25578 -9.14935 -7.33863 -7.29520 -6.74207 -4.35625 2.78333 3.01155 3.06150 3.09838 3.24214 3.91898 4.64946 5.25290 5.38106 5.50757 5.68317 5.88456 6.01782 6.21728 6.27018 6.31235 6.44166 6.53911 6.71420 6.78987 6.88442 7.12472 7.29424 7.42120 7.65105 7.94139 8.04035 8.12604 8.31568 8.63677 8.89535 8.99086 10.20284 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.023626 B = 0.014591 C = 0.009914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.828275 B = 1918.528770 C = 2823.706687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.091 3.909 3 H 0.090 0.910 4 F -0.221 7.221 5 C -0.073 4.073 6 C -0.199 4.199 7 C -0.081 4.081 8 C -0.240 4.240 9 C -0.108 4.108 10 C -0.163 4.163 11 C 0.118 3.882 12 C -0.466 4.466 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.795 5.795 16 Si 0.902 3.098 17 H -0.271 1.271 18 H -0.261 1.261 19 H -0.276 1.276 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 -1.601 0.159 5.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.055 3.945 3 H 0.108 0.892 4 F -0.202 7.202 5 C -0.111 4.111 6 C -0.201 4.201 7 C -0.099 4.099 8 C -0.259 4.259 9 C -0.126 4.126 10 C -0.182 4.182 11 C 0.116 3.884 12 C -0.496 4.496 13 H 0.097 0.903 14 C -0.141 4.141 15 N -0.421 5.421 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.185 1.185 19 H -0.201 1.201 20 H 0.090 0.910 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.135 0.865 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.831 -1.405 0.072 5.031 hybrid contribution -0.175 0.664 0.309 0.753 sum -5.005 -0.742 0.381 5.074 Atomic orbital electron populations 1.22386 0.95909 1.02413 1.02677 1.21580 0.92657 0.97691 0.82589 0.89176 1.92744 1.90503 1.83594 1.53390 1.20714 0.94746 0.98895 0.96713 1.19518 0.92919 0.98774 1.08868 1.20390 0.93515 0.97097 0.98894 1.20370 0.94173 0.99751 1.11623 1.20696 0.97380 0.94751 0.99792 1.21301 0.93999 0.98406 1.04524 1.17429 0.92080 0.90778 0.88160 1.19529 1.01293 0.91774 1.36961 0.90287 1.25874 0.94493 0.99732 0.93962 1.69828 1.20306 1.20566 1.31369 0.86396 0.79777 0.80155 0.80993 1.19626 1.18464 1.20097 0.90989 0.92322 0.92268 0.92812 0.90334 0.89507 0.89647 0.89578 0.86527 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 9.65 37.16 0.36 -2.27 15 2 C 0.09 1.76 3.95 -26.73 -0.11 1.66 15 3 H 0.09 1.92 7.98 -51.93 -0.41 1.51 15 4 F -0.22 -4.71 16.91 2.25 0.04 -4.67 15 5 C -0.07 -1.48 4.64 -27.88 -0.13 -1.61 15 6 C -0.20 -4.81 5.03 -103.91 -0.52 -5.33 15 7 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 15 8 C -0.24 -5.61 10.05 -39.29 -0.39 -6.01 15 9 C -0.11 -2.61 10.02 -39.66 -0.40 -3.01 15 10 C -0.16 -4.28 8.68 -38.87 -0.34 -4.62 15 11 C 0.12 3.08 5.56 -106.82 -0.59 2.49 15 12 C -0.47 -11.82 8.29 -37.74 -0.31 -12.13 15 13 H 0.08 1.89 6.37 -52.49 -0.33 1.56 15 14 C 0.08 1.88 5.16 -17.34 -0.09 1.79 15 15 N -0.80 -20.37 10.98 55.55 0.61 -19.76 15 16 Si 0.90 18.24 29.59 -169.99 -5.03 13.21 15 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 18 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 19 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 20 H 0.07 0.98 8.14 -51.93 -0.42 0.55 15 21 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.05 1.00 8.05 -51.93 -0.42 0.58 15 24 H 0.08 1.54 6.49 -51.93 -0.34 1.20 15 25 H 0.09 1.86 8.06 -52.49 -0.42 1.43 15 26 H 0.09 1.78 8.06 -52.48 -0.42 1.36 15 27 H 0.09 1.87 8.06 -52.49 -0.42 1.44 15 28 H 0.12 3.14 6.23 -52.49 -0.33 2.82 15 29 H 0.28 6.54 8.30 -40.82 -0.34 6.20 15 LS Contribution 251.51 15.07 3.79 3.79 Total: -1.00 -27.25 251.51 -7.00 -34.26 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -3.50 Total: 4.50 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -2.91 Total: -31.32 kcal Atomic # 7 Polarization: -20.37 SS G_CDS: 0.61 Total: -19.76 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.04 Total: -4.67 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.25 -7.00 -34.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212709246.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.712 kcal (2) G-P(sol) polarization free energy of solvation -27.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds