Wall clock time and date at job start Mon Mar 30 2020 02:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47124 * 2 1 4 4 F 1.39893 * 109.47467 * 120.00461 * 2 1 3 5 5 C 1.53009 * 109.46997 * 240.00401 * 2 1 3 6 6 C 1.50697 * 109.46977 * 175.00053 * 5 2 1 7 7 C 1.37646 * 120.12744 * 264.99865 * 6 5 2 8 8 C 1.38608 * 120.24724 * 180.02562 * 7 6 5 9 9 C 1.38653 * 120.50550 * 359.97438 * 8 7 6 10 10 C 1.37599 * 120.24908 * 359.97438 * 9 8 7 11 11 C 1.40702 * 120.12881 * 85.25292 * 6 5 2 12 12 C 1.41388 * 120.24410 * 0.02562 * 11 6 5 13 13 H 1.08001 * 120.00183 * 332.10197 * 12 11 6 14 14 C 1.39948 * 120.00000 * 152.10419 * 12 11 6 15 15 N 1.30825 * 120.00010 * 160.16794 * 14 12 11 16 16 Si 1.86805 * 119.99880 * 340.16164 * 14 12 11 17 17 H 1.48498 * 109.46722 * 95.47292 * 16 14 12 18 18 H 1.48501 * 109.47136 * 215.47398 * 16 14 12 19 19 H 1.48503 * 109.47111 * 335.47074 * 16 14 12 20 20 H 1.08997 * 109.47304 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47396 * 299.99939 * 1 2 3 22 22 H 1.09006 * 109.47408 * 59.99924 * 1 2 3 23 23 H 1.08998 * 109.46632 * 54.99915 * 5 2 1 24 24 H 1.09000 * 109.46935 * 295.00060 * 5 2 1 25 25 H 1.08001 * 119.87573 * 359.97438 * 7 6 5 26 26 H 1.08003 * 119.75116 * 180.02562 * 8 7 6 27 27 H 1.08003 * 119.87867 * 180.02562 * 9 8 7 28 28 H 1.07993 * 120.13102 * 179.97438 * 10 9 8 29 29 H 0.97003 * 119.99754 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6595 1.1421 5 6 2.0399 -0.7212 -1.2494 6 6 3.5418 -0.6149 -1.3128 7 6 4.1330 0.3854 -2.0508 8 6 5.5142 0.4852 -2.1113 9 6 6.3157 -0.4186 -1.4306 10 6 5.7465 -1.4259 -0.6859 11 6 4.3452 -1.5409 -0.6223 12 6 3.7491 -2.5761 0.1340 13 1 2.7683 -2.4351 0.5635 14 6 4.4301 -3.7835 0.3262 15 7 4.0904 -4.5768 1.3095 16 14 5.8241 -4.2625 -0.8214 17 1 7.1205 -3.8566 -0.2216 18 1 5.8127 -5.7331 -1.0272 19 1 5.6472 -3.5785 -2.1275 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.6053 -0.2616 -2.1370 24 1 1.7516 -1.7715 -1.2058 25 1 3.5185 1.0946 -2.5853 26 1 5.9696 1.2735 -2.6924 27 1 7.3908 -0.3311 -1.4845 28 1 6.3725 -2.1291 -0.1569 29 1 4.5622 -5.4138 1.4425 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212709305.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:28 Heat of formation + Delta-G solvation = -65.081001 kcal Electronic energy + Delta-G solvation = -13634.987994 eV Core-core repulsion = 11242.722845 eV Total energy + Delta-G solvation = -2392.265149 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.34476 -39.68882 -35.45836 -34.96915 -32.22435 -31.55626 -27.76726 -26.38744 -23.24287 -22.64304 -21.16375 -19.17886 -17.69073 -17.20955 -16.42344 -16.13872 -15.62438 -15.49914 -15.31667 -14.45912 -13.94862 -13.77778 -13.44301 -13.04083 -12.98999 -12.84331 -12.68183 -12.54671 -11.96537 -11.79163 -11.47886 -11.46657 -11.07524 -10.91812 -9.39299 -9.24704 -8.82957 -6.36359 0.82073 0.91787 1.25361 1.39425 1.47776 2.13640 2.65856 3.52657 3.91953 4.04035 4.08268 4.27613 4.40035 4.43508 4.61373 4.67714 4.86571 4.92838 5.00767 5.15142 5.18872 5.26012 5.36682 5.45500 5.74139 5.93237 6.02557 6.15718 6.38363 6.55531 6.87702 6.96672 8.23297 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.026584 B = 0.015628 C = 0.010782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.023874 B = 1791.271553 C = 2596.259286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.083 3.917 3 H 0.084 0.916 4 F -0.231 7.231 5 C -0.080 4.080 6 C -0.198 4.198 7 C -0.080 4.080 8 C -0.236 4.236 9 C -0.091 4.091 10 C -0.266 4.266 11 C 0.077 3.923 12 C -0.471 4.471 13 H 0.086 0.914 14 C 0.045 3.955 15 N -0.848 5.848 16 Si 0.960 3.040 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.256 1.256 20 H 0.056 0.944 21 H 0.070 0.930 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.055 0.945 25 H 0.134 0.866 26 H 0.128 0.872 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 7.363 -5.993 9.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.047 3.953 3 H 0.102 0.898 4 F -0.212 7.212 5 C -0.117 4.117 6 C -0.199 4.199 7 C -0.098 4.098 8 C -0.255 4.255 9 C -0.109 4.109 10 C -0.285 4.285 11 C 0.074 3.926 12 C -0.501 4.501 13 H 0.104 0.896 14 C -0.169 4.169 15 N -0.475 5.475 16 Si 0.785 3.215 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.180 1.180 20 H 0.075 0.925 21 H 0.089 0.911 22 H 0.119 0.881 23 H 0.121 0.879 24 H 0.074 0.926 25 H 0.151 0.849 26 H 0.146 0.854 27 H 0.136 0.864 28 H 0.105 0.895 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.845 7.103 -5.782 9.591 hybrid contribution 0.759 -0.804 0.240 1.131 sum -2.087 6.299 -5.542 8.646 Atomic orbital electron populations 1.22344 0.92498 1.03278 1.04496 1.21861 0.95630 0.95893 0.81931 0.89819 1.92788 1.90769 1.83500 1.54132 1.20853 0.92156 1.01003 0.97733 1.19989 0.95177 1.00738 1.03986 1.20952 0.94974 0.96487 0.97411 1.20871 0.93792 1.03196 1.07656 1.20967 0.99220 0.94665 0.96094 1.21163 0.95075 1.03308 1.08936 1.17817 0.91764 0.92981 0.90018 1.19911 1.05064 0.97797 1.27294 0.89623 1.26835 0.98671 0.96356 0.95040 1.69769 1.40012 1.11697 1.26006 0.85580 0.78580 0.76454 0.80857 1.19349 1.20696 1.18039 0.92509 0.91094 0.88107 0.87942 0.92589 0.84868 0.85434 0.86435 0.89462 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.40 9.65 71.98 0.69 -3.71 15 2 C 0.08 2.91 3.95 30.60 0.12 3.03 15 3 H 0.08 2.66 8.14 -2.38 -0.02 2.64 15 4 F -0.23 -10.80 14.04 44.97 0.63 -10.16 15 5 C -0.08 -3.00 4.67 29.85 0.14 -2.86 15 6 C -0.20 -8.77 5.10 -19.40 -0.10 -8.87 15 7 C -0.08 -3.07 9.66 22.22 0.21 -2.86 15 8 C -0.24 -9.04 10.05 22.46 0.23 -8.82 15 9 C -0.09 -3.89 10.02 22.22 0.22 -3.67 15 10 C -0.27 -13.23 7.23 22.73 0.16 -13.06 15 11 C 0.08 4.00 5.02 -21.29 -0.11 3.89 15 12 C -0.47 -26.85 8.08 23.46 0.19 -26.66 15 13 H 0.09 5.18 5.07 -2.91 -0.01 5.17 15 14 C 0.05 2.51 5.39 85.26 0.46 2.97 15 15 N -0.85 -48.29 13.93 21.83 0.30 -47.99 15 16 Si 0.96 45.08 24.52 68.60 1.68 46.76 15 17 H -0.27 -12.15 6.67 99.48 0.66 -11.49 15 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 19 H -0.26 -12.28 6.90 99.48 0.69 -11.60 15 20 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 21 H 0.07 1.69 8.14 -2.39 -0.02 1.67 15 22 H 0.10 1.95 8.14 -2.38 -0.02 1.93 15 23 H 0.10 2.98 8.05 -2.39 -0.02 2.96 15 24 H 0.06 2.38 7.08 -2.39 -0.02 2.36 15 25 H 0.13 3.99 8.06 -2.91 -0.02 3.96 15 26 H 0.13 3.96 8.06 -2.91 -0.02 3.94 15 27 H 0.12 4.27 8.06 -2.91 -0.02 4.25 15 28 H 0.09 4.44 4.62 -2.91 -0.01 4.42 15 29 H 0.29 14.90 8.30 -92.71 -0.77 14.13 15 Total: -1.00 -63.64 241.86 5.92 -57.72 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.08 Total: 14.29 kcal Atomic # 6 Polarization: -62.84 SS G_CDS: 2.23 Total: -60.61 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.30 Total: -47.99 kcal Atomic # 9 Polarization: -10.80 SS G_CDS: 0.63 Total: -10.16 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.68 Total: 46.76 kcal Total: -63.64 5.92 -57.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212709305.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.365 kcal (2) G-P(sol) polarization free energy of solvation -63.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds