Wall clock time and date at job start Mon Mar 30 2020 02:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00395 * 2 1 4 4 H 1.48501 * 109.46932 * 85.18075 * 3 2 1 5 5 H 1.48494 * 109.47043 * 205.18408 * 3 2 1 6 6 H 1.48497 * 109.46639 * 325.18372 * 3 2 1 7 7 C 1.39944 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00073 * 196.31955 * 7 2 1 9 9 C 1.41400 * 120.00090 * 16.31356 * 7 2 1 10 10 C 1.40732 * 120.23872 * 26.15218 * 9 7 2 11 11 C 1.37601 * 119.74149 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.24745 * 0.02602 * 11 10 9 13 13 C 1.38605 * 120.50572 * 359.97438 * 12 11 10 14 14 C 1.37645 * 120.24651 * 359.67394 * 13 12 11 15 15 C 1.50703 * 120.13007 * 180.32018 * 14 13 12 16 16 C 1.52996 * 109.47062 * 265.30930 * 15 14 13 17 17 C 1.52995 * 109.47192 * 180.02562 * 16 15 14 18 18 F 1.39900 * 109.47669 * 179.97438 * 17 16 15 19 19 H 0.97004 * 119.99323 * 0.02562 * 1 2 3 20 20 H 1.07997 * 120.13238 * 359.97135 * 10 9 7 21 21 H 1.07997 * 119.87262 * 179.97438 * 11 10 9 22 22 H 1.08003 * 119.74602 * 179.97438 * 12 11 10 23 23 H 1.07994 * 119.87846 * 179.97438 * 13 12 11 24 24 H 1.09000 * 109.46646 * 25.30567 * 15 14 13 25 25 H 1.08997 * 109.47028 * 145.30773 * 15 14 13 26 26 H 1.09007 * 109.46878 * 299.99654 * 16 15 14 27 27 H 1.08997 * 109.47327 * 60.00026 * 16 15 14 28 28 H 1.09002 * 109.47293 * 299.99863 * 17 16 15 29 29 H 1.09010 * 109.46902 * 59.99598 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3880 2.1051 1.3951 5 1 3.5871 1.4128 -0.5957 6 1 1.4944 2.6211 -0.7994 7 6 2.0079 -1.2120 0.0005 8 1 3.0553 -1.2307 0.2634 9 6 1.3436 -2.4120 -0.3429 10 6 0.2149 -2.3819 -1.1829 11 6 -0.4234 -3.5559 -1.5110 12 6 0.0412 -4.7652 -1.0168 13 6 1.1519 -4.8068 -0.1887 14 6 1.8105 -3.6456 0.1468 15 6 3.0222 -3.6946 1.0416 16 6 2.5967 -3.4475 2.4902 17 6 3.8269 -3.4967 3.3985 18 9 3.4380 -3.2702 4.7232 19 1 -0.4849 0.8401 -0.0004 20 1 -0.1489 -1.4410 -1.5685 21 1 -1.2900 -3.5352 -2.1551 22 1 -0.4662 -5.6818 -1.2792 23 1 1.5049 -5.7543 0.1908 24 1 3.4922 -4.6749 0.9631 25 1 3.7315 -2.9259 0.7350 26 1 2.1265 -2.4672 2.5686 27 1 1.8874 -4.2163 2.7968 28 1 4.2975 -4.4767 3.3202 29 1 4.5359 -2.7276 3.0918 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212709394.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:17 Heat of formation + Delta-G solvation = -59.589062 kcal Electronic energy + Delta-G solvation = -13210.539664 eV Core-core repulsion = 10818.512664 eV Total energy + Delta-G solvation = -2392.027000 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.20271 -37.82786 -33.84765 -33.61893 -29.77824 -29.31025 -25.73087 -24.58109 -21.42418 -20.94581 -19.41060 -17.16640 -15.91900 -15.53279 -15.23332 -14.64557 -14.32739 -13.91201 -13.49609 -12.66341 -12.45374 -11.95530 -11.81486 -11.47233 -11.08659 -10.89695 -10.80291 -10.65335 -10.51061 -10.34273 -10.03988 -9.44043 -9.26081 -9.14022 -7.35795 -7.32651 -6.74434 -4.34990 2.78320 2.98717 3.07067 3.10636 3.23333 3.92937 4.64323 5.17701 5.24075 5.33666 5.61142 5.79493 5.95629 6.20753 6.27360 6.47023 6.48430 6.50394 6.67333 6.86895 7.01059 7.13147 7.26704 7.40330 7.63761 7.91501 8.03671 8.10022 8.30350 8.63296 8.89796 8.98122 10.20243 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.018710 B = 0.014467 C = 0.008847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.140384 B = 1934.935595 C = 3164.201665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.261 1.261 6 H -0.276 1.276 7 C -0.461 4.461 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.162 4.162 11 C -0.109 4.109 12 C -0.241 4.241 13 C -0.091 4.091 14 C -0.196 4.196 15 C -0.046 4.046 16 C -0.143 4.143 17 C 0.060 3.940 18 F -0.228 7.228 19 H 0.279 0.721 20 H 0.117 0.883 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.502 -2.325 1.868 5.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.185 1.185 6 H -0.201 1.201 7 C -0.491 4.491 8 H 0.097 0.903 9 C 0.115 3.885 10 C -0.182 4.182 11 C -0.127 4.127 12 C -0.260 4.260 13 C -0.109 4.109 14 C -0.198 4.198 15 C -0.083 4.083 16 C -0.181 4.181 17 C 0.005 3.995 18 F -0.209 7.209 19 H 0.090 0.910 20 H 0.134 0.866 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.104 0.896 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.292 -2.150 1.914 5.168 hybrid contribution 0.135 0.779 0.056 0.792 sum 4.427 -1.371 1.970 5.036 Atomic orbital electron populations 1.69827 1.07522 1.29053 1.35691 1.25882 0.94694 1.01151 0.92384 0.86389 0.80774 0.81081 0.79060 1.19584 1.18471 1.20101 1.19539 0.97451 0.90865 1.41203 0.90260 1.17438 0.91098 0.91523 0.88457 1.21316 0.99318 0.96635 1.00899 1.20689 0.98637 0.93479 0.99928 1.20351 1.01608 0.96179 1.07899 1.20382 0.96099 0.95938 0.98469 1.19566 1.01170 0.93688 1.05328 1.20016 0.96421 0.99714 0.92193 1.22113 0.96535 1.04354 0.95062 1.22135 0.98686 1.01766 0.76902 1.92720 1.93079 1.96467 1.38625 0.90980 0.86560 0.89613 0.89707 0.89583 0.93661 0.91686 0.89784 0.91816 0.91614 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.42 10.98 55.55 0.61 -19.81 15 2 C 0.08 1.88 5.16 -17.34 -0.09 1.79 15 3 Si 0.90 18.46 29.59 -169.99 -5.03 13.43 15 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 5 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 6 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 7 C -0.46 -11.72 8.29 -37.74 -0.31 -12.03 15 8 H 0.08 1.92 6.36 -52.49 -0.33 1.58 15 9 C 0.12 3.03 5.56 -106.82 -0.59 2.44 15 10 C -0.16 -4.22 8.68 -38.87 -0.34 -4.55 15 11 C -0.11 -2.59 10.02 -39.66 -0.40 -2.99 15 12 C -0.24 -5.46 10.05 -39.29 -0.39 -5.86 15 13 C -0.09 -2.03 9.66 -39.66 -0.38 -2.41 15 14 C -0.20 -4.57 5.19 -103.91 -0.54 -5.11 15 15 C -0.05 -0.89 4.86 -27.88 -0.14 -1.03 15 16 C -0.14 -2.63 5.65 -26.74 -0.15 -2.78 15 17 C 0.06 0.91 7.55 37.15 0.28 1.19 15 18 F -0.23 -3.93 17.36 2.25 0.04 -3.90 15 19 H 0.28 6.56 8.30 -40.82 -0.34 6.23 15 20 H 0.12 3.12 6.23 -52.49 -0.33 2.79 15 21 H 0.09 1.83 8.06 -52.49 -0.42 1.41 15 22 H 0.08 1.71 8.06 -52.48 -0.42 1.28 15 23 H 0.09 1.69 8.06 -52.49 -0.42 1.27 15 24 H 0.04 0.77 8.05 -51.93 -0.42 0.35 15 25 H 0.06 1.26 6.49 -51.93 -0.34 0.92 15 26 H 0.08 1.78 7.97 -51.92 -0.41 1.36 15 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 29 H 0.07 0.98 8.14 -51.92 -0.42 0.56 15 LS Contribution 251.93 15.07 3.80 3.80 Total: -1.00 -26.87 251.93 -7.14 -34.01 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.50 Total: 3.81 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: -3.05 Total: -31.34 kcal Atomic # 7 Polarization: -20.42 SS G_CDS: 0.61 Total: -19.81 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.90 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.87 -7.14 -34.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212709394.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.580 kcal (2) G-P(sol) polarization free energy of solvation -26.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds