Wall clock time and date at job start Mon Mar 30 2020 02:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 120.00395 * 2 1 4 4 H 1.48501 * 109.46932 * 85.18075 * 3 2 1 5 5 H 1.48494 * 109.47043 * 205.18408 * 3 2 1 6 6 H 1.48497 * 109.46639 * 325.18372 * 3 2 1 7 7 C 1.39944 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00073 * 196.31955 * 7 2 1 9 9 C 1.41400 * 120.00090 * 16.31356 * 7 2 1 10 10 C 1.40732 * 120.23872 * 26.15218 * 9 7 2 11 11 C 1.37601 * 119.74149 * 179.97438 * 10 9 7 12 12 C 1.38655 * 120.24745 * 0.02602 * 11 10 9 13 13 C 1.38605 * 120.50572 * 359.97438 * 12 11 10 14 14 C 1.37645 * 120.24651 * 359.67394 * 13 12 11 15 15 C 1.50703 * 120.13007 * 180.32018 * 14 13 12 16 16 C 1.52996 * 109.47062 * 265.30930 * 15 14 13 17 17 C 1.52995 * 109.47192 * 180.02562 * 16 15 14 18 18 F 1.39900 * 109.47669 * 179.97438 * 17 16 15 19 19 H 0.97004 * 119.99323 * 0.02562 * 1 2 3 20 20 H 1.07997 * 120.13238 * 359.97135 * 10 9 7 21 21 H 1.07997 * 119.87262 * 179.97438 * 11 10 9 22 22 H 1.08003 * 119.74602 * 179.97438 * 12 11 10 23 23 H 1.07994 * 119.87846 * 179.97438 * 13 12 11 24 24 H 1.09000 * 109.46646 * 25.30567 * 15 14 13 25 25 H 1.08997 * 109.47028 * 145.30773 * 15 14 13 26 26 H 1.09007 * 109.46878 * 299.99654 * 16 15 14 27 27 H 1.08997 * 109.47327 * 60.00026 * 16 15 14 28 28 H 1.09002 * 109.47293 * 299.99863 * 17 16 15 29 29 H 1.09010 * 109.46902 * 59.99598 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3880 2.1051 1.3951 5 1 3.5871 1.4128 -0.5957 6 1 1.4944 2.6211 -0.7994 7 6 2.0079 -1.2120 0.0005 8 1 3.0553 -1.2307 0.2634 9 6 1.3436 -2.4120 -0.3429 10 6 0.2149 -2.3819 -1.1829 11 6 -0.4234 -3.5559 -1.5110 12 6 0.0412 -4.7652 -1.0168 13 6 1.1519 -4.8068 -0.1887 14 6 1.8105 -3.6456 0.1468 15 6 3.0222 -3.6946 1.0416 16 6 2.5967 -3.4475 2.4902 17 6 3.8269 -3.4967 3.3985 18 9 3.4380 -3.2702 4.7232 19 1 -0.4849 0.8401 -0.0004 20 1 -0.1489 -1.4410 -1.5685 21 1 -1.2900 -3.5352 -2.1551 22 1 -0.4662 -5.6818 -1.2792 23 1 1.5049 -5.7543 0.1908 24 1 3.4922 -4.6749 0.9631 25 1 3.7315 -2.9259 0.7350 26 1 2.1265 -2.4672 2.5686 27 1 1.8874 -4.2163 2.7968 28 1 4.2975 -4.4767 3.3202 29 1 4.5359 -2.7276 3.0918 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212709394.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:17 Heat of formation + Delta-G solvation = -72.226764 kcal Electronic energy + Delta-G solvation = -13211.087676 eV Core-core repulsion = 10818.512664 eV Total energy + Delta-G solvation = -2392.575012 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.49751 -39.62009 -35.50690 -35.37624 -31.54186 -31.06189 -27.46941 -26.22349 -22.91132 -22.78204 -21.14926 -19.02774 -17.38451 -17.07048 -16.70277 -16.18296 -15.86230 -15.59781 -15.22042 -14.38737 -14.08231 -13.66153 -13.53262 -13.15525 -12.77036 -12.61298 -12.33015 -12.27327 -12.05984 -11.90797 -11.48039 -11.19055 -11.03737 -10.93962 -9.24034 -9.15343 -8.58184 -6.26620 1.00820 1.14499 1.38821 1.49712 1.55099 2.21649 2.79624 3.66222 3.94508 4.00475 4.12947 4.41694 4.44340 4.56228 4.61806 4.76391 4.90079 5.05831 5.07896 5.17205 5.34933 5.40023 5.49107 5.58735 5.81623 6.07743 6.18383 6.22953 6.44992 6.76017 7.00835 7.11563 8.38802 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.018710 B = 0.014467 C = 0.008847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.140384 B = 1934.935595 C = 3164.201665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.033 3.967 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.255 1.255 6 H -0.271 1.271 7 C -0.484 4.484 8 H 0.084 0.916 9 C 0.084 3.916 10 C -0.194 4.194 11 C -0.119 4.119 12 C -0.242 4.242 13 C -0.098 4.098 14 C -0.204 4.204 15 C -0.042 4.042 16 C -0.136 4.136 17 C 0.064 3.936 18 F -0.240 7.240 19 H 0.284 0.716 20 H 0.095 0.905 21 H 0.103 0.897 22 H 0.114 0.886 23 H 0.120 0.880 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.908 -3.336 2.324 7.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.178 1.178 6 H -0.196 1.196 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.082 3.918 10 C -0.214 4.214 11 C -0.138 4.138 12 C -0.261 4.261 13 C -0.116 4.116 14 C -0.205 4.205 15 C -0.079 4.079 16 C -0.174 4.174 17 C 0.009 3.991 18 F -0.221 7.221 19 H 0.094 0.906 20 H 0.113 0.887 21 H 0.121 0.879 22 H 0.132 0.868 23 H 0.138 0.862 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.700 -3.175 2.369 6.941 hybrid contribution -0.358 0.965 -0.105 1.034 sum 5.343 -2.210 2.263 6.209 Atomic orbital electron populations 1.69905 1.09029 1.30088 1.36858 1.26716 0.95380 1.04402 0.91619 0.85332 0.79477 0.76663 0.79152 1.19064 1.17825 1.19621 1.19771 0.97780 0.91637 1.42230 0.89815 1.17840 0.91700 0.93077 0.89206 1.21317 1.00773 0.96724 1.02574 1.20954 0.99129 0.93448 1.00251 1.20759 1.01615 0.96703 1.07041 1.20806 0.95762 0.97039 0.97954 1.20074 1.02226 0.93129 1.05065 1.20023 0.94821 1.01430 0.91644 1.21976 0.97940 1.02002 0.95512 1.22198 0.97146 1.04352 0.75358 1.92698 1.93213 1.96687 1.39502 0.90583 0.88652 0.87890 0.86781 0.86211 0.90424 0.91957 0.93544 0.92181 0.88090 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.22 10.98 21.83 0.24 -43.98 15 2 C 0.03 1.64 5.16 85.26 0.44 2.08 15 3 Si 0.97 38.27 29.59 68.60 2.03 40.30 15 4 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15 5 H -0.25 -9.66 7.11 99.48 0.71 -8.96 15 6 H -0.27 -10.37 7.11 99.48 0.71 -9.66 15 7 C -0.48 -25.15 8.29 23.46 0.19 -24.96 15 8 H 0.08 4.10 6.36 -2.91 -0.02 4.08 15 9 C 0.08 4.42 5.56 -21.29 -0.12 4.31 15 10 C -0.19 -10.40 8.68 22.73 0.20 -10.20 15 11 C -0.12 -5.69 10.02 22.22 0.22 -5.46 15 12 C -0.24 -10.52 10.05 22.46 0.23 -10.29 15 13 C -0.10 -4.15 9.66 22.22 0.21 -3.93 15 14 C -0.20 -9.32 5.19 -19.40 -0.10 -9.42 15 15 C -0.04 -1.54 4.86 29.85 0.15 -1.39 15 16 C -0.14 -4.84 5.65 30.59 0.17 -4.66 15 17 C 0.06 1.77 7.55 71.98 0.54 2.31 15 18 F -0.24 -7.82 17.36 44.97 0.78 -7.03 15 19 H 0.28 13.78 8.30 -92.71 -0.77 13.01 15 20 H 0.10 5.38 6.23 -2.91 -0.02 5.37 15 21 H 0.10 4.38 8.06 -2.91 -0.02 4.36 15 22 H 0.11 4.23 8.06 -2.91 -0.02 4.21 15 23 H 0.12 4.23 8.06 -2.91 -0.02 4.20 15 24 H 0.08 2.34 8.05 -2.39 -0.02 2.32 15 25 H 0.06 2.31 6.49 -2.39 -0.02 2.30 15 26 H 0.05 1.98 7.97 -2.38 -0.02 1.96 15 27 H 0.06 2.14 8.14 -2.39 -0.02 2.12 15 28 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 29 H 0.09 2.13 8.14 -2.38 -0.02 2.11 15 Total: -1.00 -58.57 251.93 6.32 -52.25 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 1.13 Total: 20.09 kcal Atomic # 6 Polarization: -63.77 SS G_CDS: 2.14 Total: -61.63 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.24 Total: -43.98 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 0.78 Total: -7.03 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -58.57 6.32 -52.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212709394.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.973 kcal (2) G-P(sol) polarization free energy of solvation -58.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds