Wall clock time and date at job start Mon Mar 30 2020 02:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47320 * 2 1 4 4 F 1.39898 * 109.47209 * 239.99704 * 2 1 3 5 5 C 1.53004 * 109.47074 * 119.99817 * 2 1 3 6 6 C 1.50693 * 109.47326 * 185.00035 * 5 2 1 7 7 C 1.38662 * 119.87795 * 89.99603 * 6 5 2 8 8 C 1.38612 * 120.50118 * 180.02562 * 7 6 5 9 9 C 1.37638 * 120.25003 * 0.25461 * 8 7 6 10 10 C 1.40696 * 119.74314 * 359.47813 * 9 8 7 11 11 C 1.41396 * 120.24706 * 180.26894 * 10 9 8 12 12 H 1.07995 * 120.00359 * 204.54651 * 11 10 9 13 13 C 1.39947 * 119.99552 * 24.54410 * 11 10 9 14 14 N 1.30824 * 120.00314 * 17.71673 * 13 11 10 15 15 Si 1.86807 * 119.99794 * 197.71683 * 13 11 10 16 16 H 1.48507 * 109.46796 * 90.00228 * 15 13 11 17 17 H 1.48503 * 109.47116 * 209.99684 * 15 13 11 18 18 H 1.48493 * 109.47292 * 330.00323 * 15 13 11 19 19 C 1.37599 * 119.87551 * 269.98149 * 6 5 2 20 20 H 1.08994 * 109.46957 * 300.00498 * 1 2 3 21 21 H 1.09005 * 109.46763 * 60.00201 * 1 2 3 22 22 H 1.08999 * 109.47320 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47191 * 64.99857 * 5 2 1 24 24 H 1.08999 * 109.46866 * 304.99803 * 5 2 1 25 25 H 1.08000 * 119.74545 * 359.97438 * 7 6 5 26 26 H 1.08002 * 119.87222 * 179.97438 * 8 7 6 27 27 H 1.08002 * 120.13037 * 179.75046 * 9 8 7 28 28 H 0.96993 * 119.99823 * 180.02562 * 14 13 11 29 29 H 1.07999 * 120.12859 * 359.96964 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0400 -0.7212 1.2493 6 6 3.5418 -0.6149 1.3128 7 6 4.1315 0.4537 1.9710 8 6 5.5116 0.5645 2.0368 9 6 6.3125 -0.3847 1.4436 10 6 5.7253 -1.4763 0.7780 11 6 6.5380 -2.4606 0.1698 12 1 6.1503 -3.0522 -0.6463 13 6 7.8449 -2.6680 0.6253 14 7 8.2058 -2.2243 1.8019 15 14 9.0742 -3.5786 -0.4468 16 1 9.7940 -2.6071 -1.3090 17 1 10.0498 -4.2925 0.4157 18 1 8.3562 -4.5598 -1.2993 19 6 4.3230 -1.5788 0.7178 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0276 -0.0005 23 1 1.7516 -1.7714 1.2057 24 1 1.6054 -0.2616 2.1370 25 1 3.5106 1.2057 2.4350 26 1 5.9600 1.4013 2.5517 27 1 7.3876 -0.2942 1.4927 28 1 9.1117 -2.3678 2.1174 29 1 3.8617 -2.4107 0.2063 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212709480.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:30 Heat of formation + Delta-G solvation = -70.507567 kcal Electronic energy + Delta-G solvation = -13114.518528 eV Core-core repulsion = 10722.018066 eV Total energy + Delta-G solvation = -2392.500462 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.46834 -39.50810 -36.04078 -34.54540 -31.72365 -31.43754 -27.41286 -26.92294 -22.86404 -22.59126 -21.63433 -18.87712 -17.39522 -17.25335 -16.43282 -16.12329 -16.01958 -15.32525 -15.15784 -14.32894 -13.82343 -13.55393 -13.28242 -13.09002 -13.07393 -12.92579 -12.62461 -12.40773 -12.14813 -12.04002 -11.58075 -11.32791 -11.17727 -11.00448 -9.38207 -9.12382 -8.64409 -6.35937 0.97981 1.08213 1.35799 1.49411 1.51516 2.20047 2.70813 3.63703 3.82011 3.93909 3.98394 4.17151 4.44647 4.52038 4.65438 4.75968 4.87637 5.01495 5.05577 5.12893 5.20715 5.25671 5.33585 5.54025 5.71519 6.03824 6.11651 6.19360 6.40026 6.70590 6.94254 7.04563 8.33151 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.046679 B = 0.008297 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.702331 B = 3373.739815 C = 3810.496739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.086 3.914 3 H 0.084 0.916 4 F -0.236 7.236 5 C -0.095 4.095 6 C -0.069 4.069 7 C -0.232 4.232 8 C -0.111 4.111 9 C -0.195 4.195 10 C 0.075 3.925 11 C -0.506 4.506 12 H 0.069 0.931 13 C 0.036 3.964 14 N -0.827 5.827 15 Si 0.983 3.017 16 H -0.262 1.262 17 H -0.265 1.265 18 H -0.260 1.260 19 C -0.230 4.230 20 H 0.098 0.902 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.109 0.891 25 H 0.125 0.875 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.288 0.712 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 3.604 -0.845 9.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 H 0.102 0.898 4 F -0.218 7.218 5 C -0.133 4.133 6 C -0.069 4.069 7 C -0.251 4.251 8 C -0.129 4.129 9 C -0.214 4.214 10 C 0.073 3.927 11 C -0.536 4.536 12 H 0.087 0.913 13 C -0.179 4.179 14 N -0.453 5.453 15 Si 0.803 3.197 16 H -0.186 1.186 17 H -0.189 1.189 18 H -0.184 1.184 19 C -0.249 4.249 20 H 0.116 0.884 21 H 0.092 0.908 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.127 0.873 25 H 0.143 0.857 26 H 0.130 0.870 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.601 3.583 -0.696 9.344 hybrid contribution 0.979 -0.597 -0.401 1.215 sum -7.622 2.986 -1.097 8.260 Atomic orbital electron populations 1.22343 0.91591 1.03943 1.04700 1.21794 0.96150 0.96038 0.81003 0.89815 1.92773 1.90961 1.83853 1.54173 1.21170 0.91357 1.01842 0.98899 1.19641 0.95200 0.94672 0.97361 1.20659 0.94112 1.01183 1.09166 1.21005 0.94512 0.98147 0.99271 1.21300 0.98995 0.95755 1.05385 1.18000 0.92262 0.91942 0.90502 1.19804 0.98342 1.18427 1.16984 0.91289 1.26747 1.00281 0.95474 0.95373 1.69876 1.20426 1.38164 1.16847 0.85207 0.77213 0.78628 0.78644 1.18637 1.18888 1.18427 1.21012 0.93475 1.01391 1.09060 0.88357 0.90827 0.91454 0.91107 0.87299 0.85696 0.86969 0.88282 0.90145 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 9.65 71.98 0.69 -2.65 15 2 C 0.09 2.52 3.95 30.60 0.12 2.64 15 3 H 0.08 2.36 8.14 -2.39 -0.02 2.34 15 4 F -0.24 -8.98 16.76 44.97 0.75 -8.22 15 5 C -0.10 -3.08 5.11 29.85 0.15 -2.93 15 6 C -0.07 -3.01 4.99 -19.92 -0.10 -3.11 15 7 C -0.23 -9.94 9.70 22.46 0.22 -9.73 15 8 C -0.11 -5.28 10.02 22.22 0.22 -5.05 15 9 C -0.19 -10.76 8.70 22.73 0.20 -10.56 15 10 C 0.07 4.31 5.57 -21.29 -0.12 4.20 15 11 C -0.51 -29.11 9.05 23.46 0.21 -28.90 15 12 H 0.07 3.90 7.91 -2.91 -0.02 3.87 15 13 C 0.04 1.89 5.14 85.26 0.44 2.33 15 14 N -0.83 -45.01 10.95 21.83 0.24 -44.77 15 15 Si 0.98 40.03 29.59 68.60 2.03 42.06 15 16 H -0.26 -10.32 7.11 99.48 0.71 -9.61 15 17 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 18 H -0.26 -10.41 7.11 99.48 0.71 -9.71 15 19 C -0.23 -12.02 9.27 22.73 0.21 -11.81 15 20 H 0.10 1.45 8.14 -2.39 -0.02 1.43 15 21 H 0.07 1.33 8.14 -2.38 -0.02 1.31 15 22 H 0.07 1.32 8.14 -2.39 -0.02 1.30 15 23 H 0.07 2.30 8.08 -2.39 -0.02 2.28 15 24 H 0.11 2.80 8.08 -2.39 -0.02 2.78 15 25 H 0.13 4.34 8.06 -2.91 -0.02 4.31 15 26 H 0.11 4.63 8.06 -2.91 -0.02 4.61 15 27 H 0.10 5.70 6.16 -2.91 -0.02 5.68 15 28 H 0.29 14.08 8.30 -92.71 -0.77 13.31 15 29 H 0.08 4.37 8.06 -2.91 -0.02 4.35 15 Total: -1.00 -64.03 255.06 6.40 -57.63 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 1.12 Total: 18.88 kcal Atomic # 6 Polarization: -67.83 SS G_CDS: 2.25 Total: -65.58 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.24 Total: -44.77 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 0.75 Total: -8.22 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -64.03 6.40 -57.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212709480.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.877 kcal (2) G-P(sol) polarization free energy of solvation -64.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds