Wall clock time and date at job start Mon Mar 30 2020 02:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46804 * 2 1 4 4 F 1.39897 * 109.46881 * 240.00134 * 2 1 3 5 5 C 1.50694 * 109.47307 * 120.00383 * 2 1 3 6 6 C 1.38666 * 119.87653 * 344.97419 * 5 2 1 7 7 C 1.38611 * 120.50331 * 180.02562 * 6 5 2 8 8 C 1.37646 * 120.24669 * 0.02562 * 7 6 5 9 9 C 1.40698 * 119.74666 * 0.02562 * 8 7 6 10 10 C 1.41391 * 120.24665 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99840 * 155.25085 * 10 9 8 12 12 C 1.39947 * 119.99794 * 335.25631 * 10 9 8 13 13 N 1.30819 * 119.99909 * 342.23093 * 12 10 9 14 14 Si 1.86796 * 119.99953 * 162.23768 * 12 10 9 15 15 H 1.48508 * 109.47269 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47219 * 119.99743 * 14 12 10 17 17 H 1.48501 * 109.47311 * 239.99733 * 14 12 10 18 18 C 1.37597 * 119.87652 * 165.00156 * 5 2 1 19 19 H 1.09001 * 109.47081 * 299.99779 * 1 2 3 20 20 H 1.08996 * 109.47820 * 59.99846 * 1 2 3 21 21 H 1.09006 * 109.47450 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46741 * 180.02562 * 3 2 1 23 23 H 1.08993 * 109.47573 * 300.00077 * 3 2 1 24 24 H 1.09001 * 109.47121 * 60.00245 * 3 2 1 25 25 H 1.07995 * 119.74317 * 0.04802 * 6 5 2 26 26 H 1.07992 * 119.87693 * 179.97438 * 7 6 5 27 27 H 1.07992 * 120.12338 * 180.02562 * 8 7 6 28 28 H 0.97004 * 119.99812 * 180.02562 * 13 12 10 29 29 H 1.07995 * 120.12664 * 0.24743 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7105 1.2304 6 6 1.1678 -0.9597 2.2854 7 6 1.6162 -1.6118 3.4235 8 6 2.9276 -2.0188 3.5180 9 6 3.8142 -1.7703 2.4541 10 6 5.1634 -2.1844 2.5398 11 1 5.7300 -2.3681 1.6390 12 6 5.7644 -2.3561 3.7919 13 7 5.2257 -1.8176 4.8554 14 14 7.3360 -3.3542 3.9445 15 1 7.7379 -3.8527 2.6046 16 1 8.4149 -2.4972 4.4984 17 1 7.1044 -4.5067 4.8519 18 6 3.3474 -1.1089 1.3029 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 0.1372 -0.6438 2.2197 26 1 0.9342 -1.8003 4.2393 27 1 3.2747 -2.5270 4.4054 28 1 5.6425 -1.9363 5.7233 29 1 4.0201 -0.9098 0.4818 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214152632.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:55 Heat of formation + Delta-G solvation = -47.942350 kcal Electronic energy + Delta-G solvation = -13349.727863 eV Core-core repulsion = 10958.205902 eV Total energy + Delta-G solvation = -2391.521961 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.02919 -37.75078 -34.48790 -32.85098 -29.91665 -28.51033 -27.22093 -25.06909 -22.21078 -20.60816 -19.42011 -17.19637 -15.67917 -15.17483 -14.88243 -14.71686 -14.27747 -13.28657 -13.09825 -12.55388 -12.41274 -12.00512 -11.93544 -11.66988 -11.51968 -11.22165 -11.04263 -10.82073 -10.63113 -10.39298 -10.21822 -9.45778 -9.36431 -9.16850 -7.49267 -7.36358 -6.76880 -4.36446 2.75122 2.90904 3.07711 3.13596 3.19710 3.93691 4.58083 5.09309 5.21716 5.30078 5.34004 5.71809 5.83490 5.99207 6.12190 6.28462 6.32457 6.45700 6.50671 6.62845 6.93779 7.04714 7.21081 7.34293 7.54648 7.85509 8.03211 8.04584 8.24901 8.62129 8.88338 8.95154 10.18515 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.049250 B = 0.008857 C = 0.008044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.393878 B = 3160.751021 C = 3479.917505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 C -0.162 4.162 4 F -0.214 7.214 5 C -0.095 4.095 6 C -0.229 4.229 7 C -0.108 4.108 8 C -0.159 4.159 9 C 0.108 3.892 10 C -0.463 4.463 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.796 5.796 14 Si 0.907 3.093 15 H -0.260 1.260 16 H -0.275 1.275 17 H -0.272 1.272 18 C -0.200 4.200 19 H 0.075 0.925 20 H 0.056 0.944 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.118 0.882 28 H 0.280 0.720 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 2.530 -3.499 6.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.142 3.858 3 C -0.220 4.220 4 F -0.195 7.195 5 C -0.096 4.096 6 C -0.248 4.248 7 C -0.126 4.126 8 C -0.179 4.179 9 C 0.106 3.894 10 C -0.493 4.493 11 H 0.096 0.904 12 C -0.141 4.141 13 N -0.421 5.421 14 Si 0.732 3.268 15 H -0.184 1.184 16 H -0.200 1.200 17 H -0.197 1.197 18 C -0.220 4.220 19 H 0.094 0.906 20 H 0.075 0.925 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.220 2.551 -3.279 5.922 hybrid contribution 0.779 -0.422 0.197 0.907 sum -3.442 2.129 -3.082 5.087 Atomic orbital electron populations 1.22356 0.94392 1.03139 1.02290 1.19600 0.93499 0.91351 0.81368 1.22308 1.02749 0.94699 1.02234 1.92807 1.90486 1.83238 1.52937 1.19473 0.94945 1.01061 0.94088 1.20278 0.97812 1.10838 0.95865 1.20669 0.95933 0.99719 0.96318 1.21372 0.91816 1.03874 1.00795 1.17588 0.93130 0.88199 0.90529 1.19605 0.96362 1.40342 0.92974 0.90375 1.25899 0.99167 0.93698 0.95351 1.69830 1.38632 1.33403 1.00240 0.86280 0.81001 0.80033 0.79530 1.18361 1.20005 1.19709 1.20785 0.94278 1.06526 1.00384 0.90613 0.92489 0.91491 0.91329 0.92411 0.90915 0.88803 0.89260 0.86423 0.90952 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 7.73 37.16 0.29 -2.24 15 2 C 0.16 3.01 1.48 -91.78 -0.14 2.87 15 3 C -0.16 -2.65 8.86 37.16 0.33 -2.32 15 4 F -0.21 -4.38 16.44 2.25 0.04 -4.35 15 5 C -0.10 -2.15 4.93 -104.70 -0.52 -2.67 15 6 C -0.23 -5.05 9.10 -39.29 -0.36 -5.40 15 7 C -0.11 -2.54 10.02 -39.66 -0.40 -2.93 15 8 C -0.16 -4.18 8.70 -38.87 -0.34 -4.52 15 9 C 0.11 2.93 5.57 -106.82 -0.60 2.33 15 10 C -0.46 -12.51 9.05 -37.74 -0.34 -12.85 15 11 H 0.08 2.05 7.91 -52.49 -0.41 1.63 15 12 C 0.08 1.93 5.14 -17.34 -0.09 1.84 15 13 N -0.80 -20.68 10.97 55.55 0.61 -20.07 15 14 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 15 15 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 15 18 C -0.20 -5.06 9.07 -38.87 -0.35 -5.42 15 19 H 0.07 1.08 6.84 -51.93 -0.36 0.72 15 20 H 0.06 0.75 8.14 -51.93 -0.42 0.32 15 21 H 0.07 1.05 8.11 -51.93 -0.42 0.63 15 22 H 0.07 1.18 8.09 -51.93 -0.42 0.76 15 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 25 H 0.09 1.79 5.93 -52.49 -0.31 1.48 15 26 H 0.09 1.86 8.06 -52.49 -0.42 1.43 15 27 H 0.12 3.17 6.18 -52.49 -0.32 2.85 15 28 H 0.28 6.57 8.30 -40.82 -0.34 6.24 15 29 H 0.09 2.33 8.00 -52.49 -0.42 1.91 15 LS Contribution 249.81 15.07 3.76 3.76 Total: -1.00 -27.79 249.81 -6.62 -34.40 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -3.49 Total: 3.75 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: -2.51 Total: -31.30 kcal Atomic # 7 Polarization: -20.68 SS G_CDS: 0.61 Total: -20.07 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.04 Total: -4.35 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.79 -6.62 -34.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214152632.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.538 kcal (2) G-P(sol) polarization free energy of solvation -27.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds