Wall clock time and date at job start Mon Mar 30 2020 02:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46804 * 2 1 4 4 F 1.39897 * 109.46881 * 240.00134 * 2 1 3 5 5 C 1.50694 * 109.47307 * 120.00383 * 2 1 3 6 6 C 1.38666 * 119.87653 * 344.97419 * 5 2 1 7 7 C 1.38611 * 120.50331 * 180.02562 * 6 5 2 8 8 C 1.37646 * 120.24669 * 0.02562 * 7 6 5 9 9 C 1.40698 * 119.74666 * 0.02562 * 8 7 6 10 10 C 1.41391 * 120.24665 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99840 * 155.25085 * 10 9 8 12 12 C 1.39947 * 119.99794 * 335.25631 * 10 9 8 13 13 N 1.30819 * 119.99909 * 342.23093 * 12 10 9 14 14 Si 1.86796 * 119.99953 * 162.23768 * 12 10 9 15 15 H 1.48508 * 109.47269 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47219 * 119.99743 * 14 12 10 17 17 H 1.48501 * 109.47311 * 239.99733 * 14 12 10 18 18 C 1.37597 * 119.87652 * 165.00156 * 5 2 1 19 19 H 1.09001 * 109.47081 * 299.99779 * 1 2 3 20 20 H 1.08996 * 109.47820 * 59.99846 * 1 2 3 21 21 H 1.09006 * 109.47450 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46741 * 180.02562 * 3 2 1 23 23 H 1.08993 * 109.47573 * 300.00077 * 3 2 1 24 24 H 1.09001 * 109.47121 * 60.00245 * 3 2 1 25 25 H 1.07995 * 119.74317 * 0.04802 * 6 5 2 26 26 H 1.07992 * 119.87693 * 179.97438 * 7 6 5 27 27 H 1.07992 * 120.12338 * 180.02562 * 8 7 6 28 28 H 0.97004 * 119.99812 * 180.02562 * 13 12 10 29 29 H 1.07995 * 120.12664 * 0.24743 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7105 1.2304 6 6 1.1678 -0.9597 2.2854 7 6 1.6162 -1.6118 3.4235 8 6 2.9276 -2.0188 3.5180 9 6 3.8142 -1.7703 2.4541 10 6 5.1634 -2.1844 2.5398 11 1 5.7300 -2.3681 1.6390 12 6 5.7644 -2.3561 3.7919 13 7 5.2257 -1.8176 4.8554 14 14 7.3360 -3.3542 3.9445 15 1 7.7379 -3.8527 2.6046 16 1 8.4149 -2.4972 4.4984 17 1 7.1044 -4.5067 4.8519 18 6 3.3474 -1.1089 1.3029 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3634 -1.0277 -0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6766 1.9563 0.8900 25 1 0.1372 -0.6438 2.2197 26 1 0.9342 -1.8003 4.2393 27 1 3.2747 -2.5270 4.4054 28 1 5.6425 -1.9363 5.7233 29 1 4.0201 -0.9098 0.4818 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214152632.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:55 Heat of formation + Delta-G solvation = -61.947601 kcal Electronic energy + Delta-G solvation = -13350.335176 eV Core-core repulsion = 10958.205902 eV Total energy + Delta-G solvation = -2392.129274 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.57777 -39.58847 -36.22290 -34.55622 -31.81801 -30.26794 -28.55281 -26.94582 -23.88244 -22.48763 -21.12414 -19.01932 -17.51766 -16.80602 -16.49919 -16.23758 -16.02558 -15.03915 -14.89572 -14.23461 -13.90505 -13.58556 -13.31835 -13.16807 -12.96859 -12.89325 -12.82348 -12.54062 -12.27563 -12.07618 -11.77381 -11.24940 -11.14659 -11.05721 -9.42158 -9.26128 -8.66881 -6.38297 0.93982 0.99459 1.36246 1.48353 1.51860 2.19563 2.68210 3.62480 3.69560 3.78975 3.89741 4.12447 4.48185 4.62312 4.70852 4.79910 4.84282 5.00562 5.06950 5.12287 5.18512 5.27115 5.30455 5.48179 5.64528 5.98179 6.05983 6.13552 6.33245 6.65873 6.90852 6.99145 8.31155 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.049250 B = 0.008857 C = 0.008044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.393878 B = 3160.751021 C = 3479.917505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 C -0.160 4.160 4 F -0.227 7.227 5 C -0.095 4.095 6 C -0.220 4.220 7 C -0.110 4.110 8 C -0.187 4.187 9 C 0.077 3.923 10 C -0.505 4.505 11 H 0.069 0.931 12 C 0.037 3.963 13 N -0.825 5.825 14 Si 0.982 3.018 15 H -0.262 1.262 16 H -0.263 1.263 17 H -0.261 1.261 18 C -0.225 4.225 19 H 0.092 0.908 20 H 0.084 0.916 21 H 0.062 0.938 22 H 0.048 0.952 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.135 0.865 26 H 0.118 0.882 27 H 0.102 0.898 28 H 0.289 0.711 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 3.116 -3.684 7.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.132 3.868 3 C -0.217 4.217 4 F -0.208 7.208 5 C -0.096 4.096 6 C -0.239 4.239 7 C -0.129 4.129 8 C -0.206 4.206 9 C 0.075 3.925 10 C -0.534 4.534 11 H 0.087 0.913 12 C -0.178 4.178 13 N -0.451 5.451 14 Si 0.803 3.197 15 H -0.185 1.185 16 H -0.188 1.188 17 H -0.186 1.186 18 C -0.245 4.245 19 H 0.111 0.889 20 H 0.103 0.897 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.152 0.848 26 H 0.136 0.864 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.521 3.148 -3.467 7.239 hybrid contribution 1.068 -0.545 0.218 1.219 sum -4.452 2.603 -3.249 6.096 Atomic orbital electron populations 1.22345 0.91059 1.03655 1.04591 1.19923 0.96011 0.91785 0.79068 1.22298 1.01586 0.93425 1.04381 1.92784 1.90931 1.83688 1.53394 1.19966 0.93836 0.99791 0.95990 1.20745 0.99510 1.08953 0.94671 1.21041 0.95226 0.98837 0.97755 1.21352 0.93253 1.05615 1.00385 1.17947 0.93791 0.89123 0.91686 1.19817 0.97019 1.42885 0.93728 0.91265 1.26727 1.02561 0.94082 0.94387 1.69866 1.40323 1.34040 1.00910 0.85166 0.76658 0.78501 0.79414 1.18525 1.18790 1.18589 1.20884 0.95879 1.07818 0.99892 0.88928 0.89666 0.91873 0.93300 0.89236 0.89785 0.84757 0.86430 0.88017 0.90037 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 7.73 71.98 0.56 -3.69 15 2 C 0.15 5.31 1.48 -11.54 -0.02 5.29 15 3 C -0.16 -4.83 8.86 71.98 0.64 -4.19 15 4 F -0.23 -9.05 16.44 44.97 0.74 -8.31 15 5 C -0.10 -4.22 4.93 -19.92 -0.10 -4.32 15 6 C -0.22 -9.20 9.10 22.46 0.20 -9.00 15 7 C -0.11 -5.07 10.02 22.22 0.22 -4.85 15 8 C -0.19 -10.03 8.70 22.73 0.20 -9.83 15 9 C 0.08 4.33 5.57 -21.29 -0.12 4.21 15 10 C -0.50 -28.56 9.05 23.46 0.21 -28.34 15 11 H 0.07 3.85 7.91 -2.91 -0.02 3.83 15 12 C 0.04 1.93 5.14 85.26 0.44 2.37 15 13 N -0.83 -43.94 10.97 21.83 0.24 -43.70 15 14 Si 0.98 39.25 29.59 68.60 2.03 41.28 15 15 H -0.26 -10.39 7.11 99.48 0.71 -9.68 15 16 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 17 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 18 C -0.23 -11.73 9.07 22.73 0.21 -11.53 15 19 H 0.09 2.15 6.84 -2.39 -0.02 2.14 15 20 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 21 H 0.06 1.74 8.11 -2.38 -0.02 1.72 15 22 H 0.05 1.65 8.09 -2.38 -0.02 1.63 15 23 H 0.09 2.13 8.14 -2.39 -0.02 2.12 15 24 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 25 H 0.13 4.51 5.93 -2.91 -0.02 4.49 15 26 H 0.12 4.64 8.06 -2.91 -0.02 4.61 15 27 H 0.10 5.69 6.18 -2.91 -0.02 5.67 15 28 H 0.29 13.76 8.30 -92.71 -0.77 13.00 15 29 H 0.08 4.36 8.00 -2.91 -0.02 4.34 15 Total: -1.00 -61.69 249.81 6.58 -55.11 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 1.13 Total: 19.49 kcal Atomic # 6 Polarization: -66.32 SS G_CDS: 2.44 Total: -63.88 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.24 Total: -43.70 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 0.74 Total: -8.31 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -61.69 6.58 -55.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214152632.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.838 kcal (2) G-P(sol) polarization free energy of solvation -61.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds