Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38269 * 119.98639 * 2 1 4 4 C 1.38227 * 120.05059 * 180.25199 * 3 2 1 5 5 C 1.50698 * 119.98316 * 179.76706 * 4 3 2 6 6 C 1.50706 * 109.47294 * 269.72377 * 5 4 3 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47288 * 59.99994 * 10 8 6 12 12 H 1.48503 * 109.47086 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46819 * 299.99648 * 10 8 6 14 14 C 1.38219 * 120.02626 * 359.49319 * 4 3 2 15 15 C 1.38435 * 119.97339 * 0.25613 * 14 4 3 16 16 F 1.35103 * 120.02548 * 179.97438 * 15 14 4 17 17 C 1.38177 * 119.98942 * 179.74569 * 2 1 3 18 18 C 1.50700 * 120.01422 * 0.02562 * 17 2 1 19 19 H 1.08999 * 109.46702 * 270.25358 * 1 2 3 20 20 H 1.08994 * 109.47306 * 30.25226 * 1 2 3 21 21 H 1.08998 * 109.46625 * 150.25777 * 1 2 3 22 22 H 1.08004 * 119.97462 * 0.02562 * 3 2 1 23 23 H 1.09001 * 109.46665 * 149.72759 * 5 4 3 24 24 H 1.09000 * 109.47722 * 29.73090 * 5 4 3 25 25 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 26 26 H 1.08000 * 120.01433 * 180.22974 * 14 4 3 27 27 H 1.09002 * 109.47060 * 269.98180 * 18 17 2 28 28 H 1.09000 * 109.47018 * 29.97480 * 18 17 2 29 29 H 1.09000 * 109.47177 * 149.97952 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5803 1.1992 -0.0053 5 6 4.3319 2.5053 -0.0106 6 6 4.5830 2.9347 -1.4332 7 1 4.2329 2.3231 -2.2515 8 6 5.2597 4.1082 -1.6899 9 7 5.6864 4.8527 -0.6932 10 14 5.5703 4.6407 -3.4532 11 1 4.2725 4.8143 -4.1538 12 1 6.3110 5.9278 -3.4584 13 1 6.3738 3.6037 -4.1492 14 6 4.2733 0.0033 0.0001 15 6 3.5825 -1.1964 0.0053 16 9 4.2589 -2.3659 0.0100 17 6 2.1977 -1.1968 0.0053 18 6 1.4442 -2.5019 0.0105 19 1 -0.3633 0.0045 1.0277 20 1 -0.3633 0.8877 -0.5177 21 1 -0.3632 -0.8923 -0.5098 22 1 1.6574 2.1326 0.0004 23 1 5.2844 2.3784 0.5041 24 1 3.7417 3.2663 0.4999 25 1 6.1622 5.6785 -0.8739 26 1 5.3533 0.0047 -0.0003 27 1 1.2625 -2.8124 1.0395 28 1 0.4918 -2.3737 -0.5038 29 1 2.0334 -3.2636 -0.5002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214154938.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = -47.885251 kcal Electronic energy + Delta-G solvation = -13040.032721 eV Core-core repulsion = 10648.513236 eV Total energy + Delta-G solvation = -2391.519485 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.41612 -38.90920 -34.27922 -32.43800 -31.23277 -28.90221 -26.84869 -25.38954 -22.72920 -21.49321 -19.65264 -16.42749 -16.24067 -16.06913 -15.23546 -15.09230 -14.50659 -13.72569 -13.25469 -13.02283 -12.62100 -12.48922 -12.34993 -12.24355 -11.62123 -11.27609 -11.20869 -10.91041 -10.74882 -10.55891 -10.42972 -9.58031 -9.46210 -8.46013 -8.07935 -7.77911 -6.08228 -4.12617 1.77688 1.84612 3.30422 3.34464 3.37759 4.16975 4.44091 4.72746 5.12910 5.20575 5.27430 5.36391 5.49319 5.65590 5.82471 5.87853 6.00712 6.02037 6.06171 6.16529 6.57764 6.65122 6.81818 6.99219 7.08409 7.43560 7.60191 7.74079 7.87124 8.25453 8.92030 9.51527 11.01671 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.039743 B = 0.008080 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.350289 B = 3464.666367 C = 3723.314737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.066 4.066 3 C -0.130 4.130 4 C -0.007 4.007 5 C 0.048 3.952 6 C -0.515 4.515 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C -0.159 4.159 15 C 0.093 3.907 16 F -0.149 7.149 17 C -0.154 4.154 18 C -0.106 4.106 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.124 0.876 23 H 0.031 0.969 24 H 0.033 0.967 25 H 0.263 0.737 26 H 0.130 0.870 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 -9.750 1.696 12.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.066 4.066 3 C -0.148 4.148 4 C -0.007 4.007 5 C 0.011 3.989 6 C -0.553 4.553 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.201 1.201 14 C -0.178 4.178 15 C 0.074 3.926 16 F -0.128 7.128 17 C -0.154 4.154 18 C -0.163 4.163 19 H 0.086 0.914 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.142 0.858 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.980 -9.629 1.738 12.626 hybrid contribution 0.497 0.204 -0.981 1.118 sum -7.482 -9.425 0.757 12.057 Atomic orbital electron populations 1.20809 0.91411 1.02608 1.02028 1.19519 0.95617 0.91988 0.99471 1.21028 0.94125 0.97095 1.02577 1.20537 0.93512 0.96583 0.90112 1.18390 0.95038 0.87503 0.97990 1.20994 1.36570 1.06452 0.91271 0.92444 1.25000 0.95463 0.96375 0.97366 1.69949 1.38252 1.14118 1.30896 0.86573 0.78485 0.77852 0.84660 1.20111 1.21183 1.20116 1.21066 1.00792 0.90642 1.05278 1.17544 0.89489 0.81015 1.04565 1.91407 1.80435 1.46718 1.94240 1.19458 0.91675 0.96003 1.08310 1.20653 0.99792 0.93962 1.01878 0.91382 0.91460 0.91519 0.85754 0.95052 0.94908 0.92700 0.85234 0.91740 0.91265 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.60 36.01 0.35 -1.04 15 2 C -0.07 -1.09 5.88 -104.63 -0.62 -1.71 15 3 C -0.13 -2.50 9.35 -39.57 -0.37 -2.87 15 4 C -0.01 -0.16 5.07 -104.63 -0.53 -0.69 15 5 C 0.05 1.21 5.10 -29.03 -0.15 1.06 15 6 C -0.51 -14.33 9.09 -34.44 -0.31 -14.64 15 7 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 9 N -0.89 -26.16 13.29 55.43 0.74 -25.42 15 10 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 15 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 14 C -0.16 -3.26 9.68 -39.52 -0.38 -3.65 15 15 C 0.09 1.74 7.24 -39.42 -0.29 1.45 15 16 F -0.15 -2.69 16.48 2.25 0.04 -2.65 15 17 C -0.15 -2.57 5.89 -104.55 -0.62 -3.19 15 18 C -0.11 -1.38 9.43 36.01 0.34 -1.04 15 19 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.07 0.79 8.09 -51.93 -0.42 0.37 15 21 H 0.07 0.72 5.95 -51.93 -0.31 0.41 15 22 H 0.12 2.29 8.06 -52.48 -0.42 1.86 15 23 H 0.03 0.84 8.09 -51.93 -0.42 0.42 15 24 H 0.03 0.86 8.08 -51.93 -0.42 0.44 15 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 26 H 0.13 2.61 8.06 -52.49 -0.42 2.19 15 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 28 H 0.07 0.76 5.95 -51.93 -0.31 0.46 15 29 H 0.06 0.79 7.64 -51.93 -0.40 0.39 15 LS Contribution 254.66 15.07 3.84 3.84 Total: -1.00 -29.16 254.66 -6.59 -35.74 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -3.51 Total: -3.19 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -2.67 Total: -24.73 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.74 Total: -25.42 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.16 -6.59 -35.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214154938.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.142 kcal (2) G-P(sol) polarization free energy of solvation -29.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds