Wall clock time and date at job start Mon Mar 30 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38269 * 119.98639 * 2 1 4 4 C 1.38227 * 120.05059 * 180.25199 * 3 2 1 5 5 C 1.50698 * 119.98316 * 179.76706 * 4 3 2 6 6 C 1.50706 * 109.47294 * 269.72377 * 5 4 3 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00043 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47288 * 59.99994 * 10 8 6 12 12 H 1.48503 * 109.47086 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.46819 * 299.99648 * 10 8 6 14 14 C 1.38219 * 120.02626 * 359.49319 * 4 3 2 15 15 C 1.38435 * 119.97339 * 0.25613 * 14 4 3 16 16 F 1.35103 * 120.02548 * 179.97438 * 15 14 4 17 17 C 1.38177 * 119.98942 * 179.74569 * 2 1 3 18 18 C 1.50700 * 120.01422 * 0.02562 * 17 2 1 19 19 H 1.08999 * 109.46702 * 270.25358 * 1 2 3 20 20 H 1.08994 * 109.47306 * 30.25226 * 1 2 3 21 21 H 1.08998 * 109.46625 * 150.25777 * 1 2 3 22 22 H 1.08004 * 119.97462 * 0.02562 * 3 2 1 23 23 H 1.09001 * 109.46665 * 149.72759 * 5 4 3 24 24 H 1.09000 * 109.47722 * 29.73090 * 5 4 3 25 25 H 0.97004 * 119.99507 * 180.02562 * 9 8 6 26 26 H 1.08000 * 120.01433 * 180.22974 * 14 4 3 27 27 H 1.09002 * 109.47060 * 269.98180 * 18 17 2 28 28 H 1.09000 * 109.47018 * 29.97480 * 18 17 2 29 29 H 1.09000 * 109.47177 * 149.97952 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5803 1.1992 -0.0053 5 6 4.3319 2.5053 -0.0106 6 6 4.5830 2.9347 -1.4332 7 1 4.2329 2.3231 -2.2515 8 6 5.2597 4.1082 -1.6899 9 7 5.6864 4.8527 -0.6932 10 14 5.5703 4.6407 -3.4532 11 1 4.2725 4.8143 -4.1538 12 1 6.3110 5.9278 -3.4584 13 1 6.3738 3.6037 -4.1492 14 6 4.2733 0.0033 0.0001 15 6 3.5825 -1.1964 0.0053 16 9 4.2589 -2.3659 0.0100 17 6 2.1977 -1.1968 0.0053 18 6 1.4442 -2.5019 0.0105 19 1 -0.3633 0.0045 1.0277 20 1 -0.3633 0.8877 -0.5177 21 1 -0.3632 -0.8923 -0.5098 22 1 1.6574 2.1326 0.0004 23 1 5.2844 2.3784 0.5041 24 1 3.7417 3.2663 0.4999 25 1 6.1622 5.6785 -0.8739 26 1 5.3533 0.0047 -0.0003 27 1 1.2625 -2.8124 1.0395 28 1 0.4918 -2.3737 -0.5038 29 1 2.0334 -3.2636 -0.5002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214154938.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:53 Heat of formation + Delta-G solvation = -63.117152 kcal Electronic energy + Delta-G solvation = -13040.693226 eV Core-core repulsion = 10648.513236 eV Total energy + Delta-G solvation = -2392.179990 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.87196 -40.36555 -36.00141 -34.29495 -32.58371 -30.60723 -28.16925 -27.00660 -24.56744 -22.92083 -21.18251 -18.55193 -17.71465 -17.59743 -16.67751 -16.63345 -16.36865 -14.84856 -14.60993 -14.50509 -14.40289 -13.94263 -13.77907 -13.53097 -13.06096 -12.98247 -12.58664 -12.49574 -12.38314 -12.33744 -12.07703 -11.48705 -11.34126 -10.62749 -9.52726 -9.31534 -8.23019 -6.36769 0.28263 0.37480 1.39272 1.41842 1.50216 2.37295 2.71500 3.07993 3.30573 3.83404 3.89404 4.13605 4.20924 4.46859 4.68227 4.72606 4.79306 4.86773 4.95902 5.00884 5.13372 5.22602 5.28739 5.38600 5.41110 5.61447 5.70505 5.92119 6.05557 6.17228 6.74821 7.32007 8.86364 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.039743 B = 0.008080 C = 0.007518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.350289 B = 3464.666367 C = 3723.314737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.057 4.057 3 C -0.139 4.139 4 C -0.036 4.036 5 C 0.057 3.943 6 C -0.533 4.533 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.966 3.034 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.270 1.270 14 C -0.177 4.177 15 C 0.085 3.915 16 F -0.146 7.146 17 C -0.144 4.144 18 C -0.106 4.106 19 H 0.089 0.911 20 H 0.073 0.927 21 H 0.091 0.909 22 H 0.127 0.873 23 H 0.003 0.997 24 H 0.013 0.987 25 H 0.267 0.733 26 H 0.118 0.882 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.212 -11.181 0.741 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.057 4.057 3 C -0.157 4.157 4 C -0.036 4.036 5 C 0.020 3.980 6 C -0.571 4.571 7 H 0.072 0.928 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.790 3.210 11 H -0.190 1.190 12 H -0.204 1.204 13 H -0.195 1.195 14 C -0.196 4.196 15 C 0.066 3.934 16 F -0.124 7.124 17 C -0.145 4.145 18 C -0.162 4.162 19 H 0.107 0.893 20 H 0.091 0.909 21 H 0.110 0.890 22 H 0.145 0.855 23 H 0.022 0.978 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.136 0.864 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.098 -11.074 0.787 15.007 hybrid contribution 1.116 0.578 -0.623 1.403 sum -8.982 -10.496 0.163 13.816 Atomic orbital electron populations 1.20928 0.87706 1.04205 1.03811 1.19958 0.98084 0.90591 0.97074 1.21136 0.93049 0.98712 1.02786 1.20204 0.94709 0.95073 0.93634 1.18121 0.93930 0.89344 0.96637 1.21312 1.36761 1.06774 0.92228 0.92775 1.25910 0.95003 0.96320 1.01907 1.70070 1.38910 1.14594 1.33233 0.85486 0.78764 0.77574 0.79173 1.18987 1.20425 1.19524 1.20980 1.00456 0.91431 1.06731 1.17613 0.90506 0.80376 1.04905 1.91411 1.80607 1.46187 1.94235 1.19978 0.90902 0.98084 1.05549 1.20788 1.00397 0.91443 1.03559 0.89296 0.90851 0.89016 0.85541 0.97821 0.96895 0.92437 0.86435 0.89795 0.88553 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 9.60 71.24 0.68 -1.57 15 2 C -0.06 -1.74 5.88 -19.87 -0.12 -1.86 15 3 C -0.14 -5.31 9.35 22.27 0.21 -5.10 15 4 C -0.04 -1.63 5.07 -19.87 -0.10 -1.73 15 5 C 0.06 3.06 5.10 29.10 0.15 3.21 15 6 C -0.53 -30.66 9.09 25.60 0.23 -30.43 15 7 H 0.05 3.07 7.74 -2.91 -0.02 3.05 15 8 C 0.01 0.41 5.46 84.65 0.46 0.87 15 9 N -0.93 -55.90 13.29 21.45 0.28 -55.61 15 10 Si 0.97 44.27 29.54 68.60 2.03 46.30 15 11 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 14 C -0.18 -7.52 9.68 22.31 0.22 -7.30 15 15 C 0.09 3.12 7.24 22.38 0.16 3.28 15 16 F -0.15 -5.10 16.48 44.97 0.74 -4.35 15 17 C -0.14 -4.44 5.89 -19.82 -0.12 -4.56 15 18 C -0.11 -2.26 9.43 71.24 0.67 -1.59 15 19 H 0.09 1.53 8.14 -2.39 -0.02 1.51 15 20 H 0.07 1.45 8.09 -2.39 -0.02 1.43 15 21 H 0.09 1.45 5.95 -2.39 -0.01 1.44 15 22 H 0.13 4.67 8.06 -2.91 -0.02 4.65 15 23 H 0.00 0.20 8.09 -2.39 -0.02 0.18 15 24 H 0.01 0.72 8.08 -2.39 -0.02 0.70 15 25 H 0.27 15.06 8.31 -92.71 -0.77 14.28 15 26 H 0.12 5.08 8.06 -2.91 -0.02 5.05 15 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 15 28 H 0.10 1.57 5.95 -2.39 -0.01 1.56 15 29 H 0.06 1.38 7.64 -2.39 -0.02 1.36 15 Total: -1.00 -64.31 254.66 6.64 -57.67 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.14 Total: 2.78 kcal Atomic # 6 Polarization: -49.23 SS G_CDS: 2.45 Total: -46.78 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.28 Total: -55.61 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.74 Total: -4.35 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -64.31 6.64 -57.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214154938.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.451 kcal (2) G-P(sol) polarization free energy of solvation -64.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds