Wall clock time and date at job start Mon Mar 30 2020 02:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38262 * 119.97316 * 2 1 4 4 C 1.38181 * 120.02515 * 180.02562 * 3 2 1 5 5 C 1.38476 * 119.97463 * 359.97438 * 4 3 2 6 6 F 1.35100 * 120.02666 * 180.02562 * 5 4 3 7 7 C 1.38443 * 119.94933 * 0.02562 * 5 4 3 8 8 C 1.50695 * 120.01300 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46767 * 90.00086 * 8 7 5 10 10 H 1.08002 * 120.00268 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99716 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00291 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99825 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47310 * 89.99932 * 13 11 9 15 15 H 1.48504 * 109.47164 * 210.00368 * 13 11 9 16 16 H 1.48505 * 109.46902 * 330.00276 * 13 11 9 17 17 C 1.38222 * 119.97257 * 359.72806 * 7 5 4 18 18 C 1.50695 * 119.98913 * 180.29426 * 17 7 5 19 19 H 1.09002 * 109.47152 * 90.00116 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.00217 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.00197 * 1 2 3 22 22 H 1.08007 * 119.98887 * 359.97438 * 3 2 1 23 23 H 1.08002 * 120.01144 * 180.02562 * 4 3 2 24 24 H 1.09003 * 109.47392 * 210.00052 * 8 7 5 25 25 H 1.09001 * 109.47531 * 330.00091 * 8 7 5 26 26 H 0.97000 * 119.99863 * 179.97438 * 12 11 9 27 27 H 1.08995 * 109.46925 * 270.24864 * 18 17 7 28 28 H 1.08999 * 109.46951 * 30.24846 * 18 17 7 29 29 H 1.09000 * 109.47313 * 150.24711 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1990 -0.0005 5 6 4.2725 0.0000 -0.0005 6 9 5.6235 0.0000 -0.0005 7 6 3.5798 -1.1986 -0.0005 8 6 4.3324 -2.5042 -0.0011 9 6 4.5838 -2.9396 1.4195 10 1 4.2332 -2.3320 2.2407 11 6 5.2605 -4.1144 1.6710 12 7 5.6870 -4.8546 0.6711 13 14 5.5715 -4.6545 3.4320 14 1 4.4407 -5.4965 3.8985 15 1 6.8311 -5.4386 3.4941 16 1 5.6898 -3.4577 4.3032 17 6 2.1976 -1.1974 0.0051 18 6 1.4432 -2.5019 0.0119 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 0.8900 0.5138 21 1 -0.3633 -0.8900 0.5139 22 1 1.6571 2.1327 -0.0004 23 1 4.1189 2.1347 -0.0001 24 1 3.7427 -3.2634 -0.5149 25 1 5.2848 -2.3744 -0.5153 26 1 6.1633 -5.6808 0.8481 27 1 1.2610 -2.8214 -1.0141 28 1 2.0320 -3.2594 0.5292 29 1 0.4911 -2.3684 0.5254 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214155195.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:34 Heat of formation + Delta-G solvation = -44.482461 kcal Electronic energy + Delta-G solvation = -13370.666732 eV Core-core repulsion = 10979.294803 eV Total energy + Delta-G solvation = -2391.371929 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.99704 -38.95346 -33.79630 -32.54091 -31.78882 -28.13453 -26.46152 -25.66976 -23.27897 -20.49626 -19.86290 -16.45758 -16.33418 -16.09563 -14.76989 -14.72275 -14.19794 -13.67399 -13.28846 -12.97781 -12.47836 -12.46317 -12.09816 -11.94038 -11.64057 -11.18401 -11.04497 -10.81125 -10.66400 -10.50007 -10.27444 -9.56566 -9.42292 -8.41939 -7.95927 -7.70528 -6.04157 -4.07951 1.78047 1.92137 3.30456 3.36867 3.41697 4.16702 4.46188 5.01356 5.21851 5.25145 5.32265 5.53201 5.56146 5.79185 5.79731 6.00838 6.17263 6.19048 6.29719 6.51080 6.62269 6.78204 6.83586 6.98322 7.21339 7.47945 7.66886 7.72041 7.90998 8.29766 8.96129 9.55462 11.05753 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.034008 B = 0.010449 C = 0.009079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.137196 B = 2679.073725 C = 3083.449702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.107 4.107 3 C -0.118 4.118 4 C -0.163 4.163 5 C 0.088 3.912 6 F -0.139 7.139 7 C -0.068 4.068 8 C 0.049 3.951 9 C -0.509 4.509 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.895 3.105 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.062 4.062 18 C -0.118 4.118 19 H 0.064 0.936 20 H 0.059 0.941 21 H 0.069 0.931 22 H 0.119 0.881 23 H 0.123 0.877 24 H 0.037 0.963 25 H 0.031 0.969 26 H 0.262 0.738 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.449 8.241 -1.605 11.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.107 4.107 3 C -0.136 4.136 4 C -0.182 4.182 5 C 0.069 3.931 6 F -0.117 7.117 7 C -0.069 4.069 8 C 0.012 3.988 9 C -0.547 4.547 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.722 3.278 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.062 4.062 18 C -0.175 4.175 19 H 0.083 0.917 20 H 0.078 0.922 21 H 0.088 0.912 22 H 0.137 0.863 23 H 0.141 0.859 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.297 8.072 -1.644 11.692 hybrid contribution 0.612 -0.207 0.955 1.152 sum -7.685 7.865 -0.689 11.018 Atomic orbital electron populations 1.20771 0.91696 1.02381 1.01756 1.19713 0.95720 0.92736 1.02573 1.20553 0.92942 0.97206 1.02925 1.20949 0.94914 0.96536 1.05812 1.17606 0.77050 0.94045 1.04409 1.91454 1.29040 1.97340 1.93888 1.20645 0.93741 0.96628 0.95888 1.18320 0.94965 0.87328 0.98156 1.20976 1.36343 1.06242 0.91166 0.92589 1.24985 0.95461 0.96471 0.97228 1.69954 1.38353 1.14180 1.30669 0.86542 0.77722 0.78705 0.84805 1.20537 1.21111 1.19814 1.19493 0.92501 0.94891 0.99352 1.20899 0.99382 0.95285 1.01886 0.91720 0.92238 0.91220 0.86285 0.85935 0.94481 0.95095 0.92810 0.91831 0.89020 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.61 36.01 0.35 -1.02 15 2 C -0.11 -1.77 5.88 -104.62 -0.62 -2.38 15 3 C -0.12 -1.87 9.70 -39.59 -0.38 -2.25 15 4 C -0.16 -2.88 10.03 -39.51 -0.40 -3.27 15 5 C 0.09 1.90 7.24 -39.42 -0.29 1.61 15 6 F -0.14 -3.19 16.48 2.25 0.04 -3.16 15 7 C -0.07 -1.55 5.08 -104.55 -0.53 -2.08 15 8 C 0.05 1.29 4.24 -29.04 -0.12 1.17 15 9 C -0.51 -14.44 8.67 -34.44 -0.30 -14.73 15 10 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 11 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 12 N -0.89 -26.50 13.29 55.43 0.74 -25.76 15 13 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 15 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 17 C -0.06 -1.21 5.88 -104.63 -0.62 -1.83 15 18 C -0.12 -2.09 8.78 36.00 0.32 -1.77 15 19 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.06 0.64 8.09 -51.93 -0.42 0.22 15 21 H 0.07 0.84 5.93 -51.93 -0.31 0.53 15 22 H 0.12 1.48 8.06 -52.48 -0.42 1.06 15 23 H 0.12 1.83 8.06 -52.49 -0.42 1.41 15 24 H 0.04 0.99 6.72 -51.93 -0.35 0.64 15 25 H 0.03 0.88 7.64 -51.93 -0.40 0.49 15 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 28 H 0.09 1.89 6.37 -51.93 -0.33 1.56 15 29 H 0.06 0.89 5.94 -51.93 -0.31 0.58 15 LS Contribution 250.32 15.07 3.77 3.77 Total: -1.00 -30.17 250.32 -6.50 -36.67 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -3.34 Total: -3.30 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -2.68 Total: -24.94 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.04 Total: -3.16 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.17 -6.50 -36.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214155195.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.808 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds