Wall clock time and date at job start Mon Mar 30 2020 02:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38262 * 119.97316 * 2 1 4 4 C 1.38181 * 120.02515 * 180.02562 * 3 2 1 5 5 C 1.38476 * 119.97463 * 359.97438 * 4 3 2 6 6 F 1.35100 * 120.02666 * 180.02562 * 5 4 3 7 7 C 1.38443 * 119.94933 * 0.02562 * 5 4 3 8 8 C 1.50695 * 120.01300 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.46767 * 90.00086 * 8 7 5 10 10 H 1.08002 * 120.00268 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99716 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00291 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99825 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47310 * 89.99932 * 13 11 9 15 15 H 1.48504 * 109.47164 * 210.00368 * 13 11 9 16 16 H 1.48505 * 109.46902 * 330.00276 * 13 11 9 17 17 C 1.38222 * 119.97257 * 359.72806 * 7 5 4 18 18 C 1.50695 * 119.98913 * 180.29426 * 17 7 5 19 19 H 1.09002 * 109.47152 * 90.00116 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.00217 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.00197 * 1 2 3 22 22 H 1.08007 * 119.98887 * 359.97438 * 3 2 1 23 23 H 1.08002 * 120.01144 * 180.02562 * 4 3 2 24 24 H 1.09003 * 109.47392 * 210.00052 * 8 7 5 25 25 H 1.09001 * 109.47531 * 330.00091 * 8 7 5 26 26 H 0.97000 * 119.99863 * 179.97438 * 12 11 9 27 27 H 1.08995 * 109.46925 * 270.24864 * 18 17 7 28 28 H 1.08999 * 109.46951 * 30.24846 * 18 17 7 29 29 H 1.09000 * 109.47313 * 150.24711 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1990 -0.0005 5 6 4.2725 0.0000 -0.0005 6 9 5.6235 0.0000 -0.0005 7 6 3.5798 -1.1986 -0.0005 8 6 4.3324 -2.5042 -0.0011 9 6 4.5838 -2.9396 1.4195 10 1 4.2332 -2.3320 2.2407 11 6 5.2605 -4.1144 1.6710 12 7 5.6870 -4.8546 0.6711 13 14 5.5715 -4.6545 3.4320 14 1 4.4407 -5.4965 3.8985 15 1 6.8311 -5.4386 3.4941 16 1 5.6898 -3.4577 4.3032 17 6 2.1976 -1.1974 0.0051 18 6 1.4432 -2.5019 0.0119 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 0.8900 0.5138 21 1 -0.3633 -0.8900 0.5139 22 1 1.6571 2.1327 -0.0004 23 1 4.1189 2.1347 -0.0001 24 1 3.7427 -3.2634 -0.5149 25 1 5.2848 -2.3744 -0.5153 26 1 6.1633 -5.6808 0.8481 27 1 1.2610 -2.8214 -1.0141 28 1 2.0320 -3.2594 0.5292 29 1 0.4911 -2.3684 0.5254 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214155195.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:34 Heat of formation + Delta-G solvation = -61.444178 kcal Electronic energy + Delta-G solvation = -13371.402247 eV Core-core repulsion = 10979.294803 eV Total energy + Delta-G solvation = -2392.107444 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.69118 -40.39793 -35.72428 -33.91373 -33.59835 -29.83086 -28.08063 -26.95678 -25.26167 -21.96395 -21.43516 -18.58552 -17.97431 -17.62053 -16.66796 -16.44144 -15.67246 -14.98024 -14.73831 -14.53042 -14.31125 -13.98047 -13.67804 -13.39133 -13.03157 -12.97107 -12.79366 -12.37467 -12.29150 -12.19927 -11.87479 -11.56476 -11.28457 -10.62907 -9.46726 -9.21257 -8.22965 -6.36367 0.33290 0.45654 1.36232 1.38220 1.49450 2.36703 2.75207 3.07437 3.53742 3.92399 4.01203 4.15088 4.34212 4.37607 4.75462 4.80306 4.88572 4.96304 5.01872 5.07861 5.20496 5.22097 5.36998 5.39175 5.56787 5.65689 5.70727 5.88944 6.08299 6.22033 6.74200 7.31537 8.86685 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.034008 B = 0.010449 C = 0.009079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.137196 B = 2679.073725 C = 3083.449702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.098 4.098 3 C -0.103 4.103 4 C -0.155 4.155 5 C 0.050 3.950 6 F -0.160 7.160 7 C -0.107 4.107 8 C 0.063 3.937 9 C -0.524 4.524 10 H 0.049 0.951 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.965 3.035 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.270 1.270 17 C -0.078 4.078 18 C -0.113 4.113 19 H 0.084 0.916 20 H 0.086 0.914 21 H 0.073 0.927 22 H 0.169 0.831 23 H 0.152 0.848 24 H 0.020 0.980 25 H -0.011 1.011 26 H 0.266 0.734 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.919 10.098 -0.636 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.098 4.098 3 C -0.121 4.121 4 C -0.174 4.174 5 C 0.031 3.969 6 F -0.139 7.139 7 C -0.108 4.108 8 C 0.026 3.974 9 C -0.562 4.562 10 H 0.067 0.933 11 C -0.192 4.192 12 N -0.568 5.568 13 Si 0.789 3.211 14 H -0.189 1.189 15 H -0.204 1.204 16 H -0.195 1.195 17 C -0.078 4.078 18 C -0.170 4.170 19 H 0.102 0.898 20 H 0.105 0.895 21 H 0.092 0.908 22 H 0.186 0.814 23 H 0.169 0.831 24 H 0.038 0.962 25 H 0.007 0.993 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.779 9.935 -0.679 14.675 hybrid contribution 1.301 -0.705 0.593 1.594 sum -9.478 9.230 -0.086 13.230 Atomic orbital electron populations 1.20880 0.88089 1.04003 1.03463 1.20220 0.98200 0.91552 0.99830 1.21153 0.92146 0.98948 0.99835 1.21306 0.96020 0.95876 1.04191 1.18053 0.76461 0.95446 1.06981 1.91386 1.30663 1.97497 1.94377 1.20462 0.95353 0.95161 0.99846 1.17966 0.93232 0.89537 0.96690 1.21230 1.36497 1.06501 0.91961 0.93274 1.25912 0.94995 0.96412 1.01879 1.70079 1.39026 1.14680 1.33062 0.85449 0.78124 0.78383 0.79150 1.18946 1.20412 1.19453 1.19744 0.91305 0.97037 0.99717 1.20861 0.99991 0.93616 1.02490 0.89761 0.89484 0.90805 0.81397 0.83077 0.96194 0.99285 0.92490 0.90767 0.92987 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.61 71.24 0.68 -1.43 15 2 C -0.10 -2.88 5.88 -19.86 -0.12 -3.00 15 3 C -0.10 -2.80 9.70 22.26 0.22 -2.58 15 4 C -0.16 -5.13 10.03 22.31 0.22 -4.91 15 5 C 0.05 2.18 7.24 22.38 0.16 2.34 15 6 F -0.16 -7.80 16.48 44.97 0.74 -7.06 15 7 C -0.11 -5.06 5.08 -19.82 -0.10 -5.16 15 8 C 0.06 3.54 4.24 29.10 0.12 3.66 15 9 C -0.52 -31.17 8.67 25.60 0.22 -30.94 15 10 H 0.05 2.91 7.74 -2.91 -0.02 2.88 15 11 C 0.01 0.37 5.46 84.66 0.46 0.83 15 12 N -0.93 -57.37 13.29 21.45 0.28 -57.09 15 13 Si 0.97 45.45 29.54 68.60 2.03 47.48 15 14 H -0.26 -11.76 7.11 99.48 0.71 -11.06 15 15 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 15 17 C -0.08 -2.99 5.88 -19.87 -0.12 -3.11 15 18 C -0.11 -3.97 8.78 71.23 0.63 -3.35 15 19 H 0.08 1.41 8.14 -2.39 -0.02 1.39 15 20 H 0.09 1.29 8.09 -2.39 -0.02 1.27 15 21 H 0.07 1.42 5.93 -2.38 -0.01 1.40 15 22 H 0.17 2.99 8.06 -2.91 -0.02 2.97 15 23 H 0.15 4.04 8.06 -2.91 -0.02 4.02 15 24 H 0.02 1.15 6.72 -2.39 -0.02 1.13 15 25 H -0.01 -0.70 7.64 -2.39 -0.02 -0.72 15 26 H 0.27 15.35 8.31 -92.71 -0.77 14.58 15 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 28 H 0.05 2.22 6.37 -2.39 -0.02 2.21 15 29 H 0.09 2.58 5.94 -2.39 -0.01 2.57 15 Total: -1.00 -69.70 250.32 6.58 -63.11 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: 1.14 Total: 1.20 kcal Atomic # 6 Polarization: -50.03 SS G_CDS: 2.38 Total: -47.65 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.28 Total: -57.09 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 0.74 Total: -7.06 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -69.70 6.58 -63.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214155195.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.671 kcal (2) G-P(sol) polarization free energy of solvation -69.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds