Wall clock time and date at job start Mon Mar 30 2020 02:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38226 * 120.01253 * 2 1 4 4 C 1.38224 * 120.02768 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.97662 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46993 * 265.00388 * 5 4 3 7 7 H 1.07991 * 120.00449 * 359.72131 * 6 5 4 8 8 C 1.37885 * 119.99686 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.72095 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.72528 * 8 6 5 11 11 H 1.48498 * 109.47416 * 59.99812 * 10 8 6 12 12 H 1.48508 * 109.46609 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46903 * 299.99397 * 10 8 6 14 14 C 1.38270 * 120.04788 * 0.25358 * 4 3 2 15 15 C 1.50705 * 119.98336 * 179.74449 * 14 4 3 16 16 C 1.38178 * 120.02933 * 359.49125 * 14 4 3 17 17 C 1.38435 * 120.01593 * 180.02562 * 2 1 3 18 18 F 1.35105 * 120.02660 * 359.96149 * 17 2 1 19 19 H 1.08997 * 109.47368 * 90.00344 * 1 2 3 20 20 H 1.09007 * 109.46521 * 210.00386 * 1 2 3 21 21 H 1.08997 * 109.47448 * 329.99880 * 1 2 3 22 22 H 1.07998 * 119.98360 * 0.04591 * 3 2 1 23 23 H 1.08998 * 109.47083 * 144.99803 * 5 4 3 24 24 H 1.09001 * 109.46875 * 25.00066 * 5 4 3 25 25 H 0.97000 * 119.99651 * 180.02562 * 9 8 6 26 26 H 1.08999 * 109.47071 * 90.00554 * 15 14 4 27 27 H 1.09001 * 109.46727 * 209.99940 * 15 14 4 28 28 H 1.08998 * 109.47217 * 329.99503 * 15 14 4 29 29 H 1.07991 * 120.01623 * 180.27575 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1973 -0.0005 5 6 4.3332 2.5029 -0.0011 6 6 4.6907 2.8759 -1.4167 7 1 4.4058 2.2299 -2.2338 8 6 5.3862 4.0397 -1.6683 9 7 5.7327 4.8267 -0.6733 10 14 5.8360 4.4983 -3.4223 11 1 4.5981 4.6383 -4.2304 12 1 6.5766 5.7855 -3.4229 13 1 6.6918 3.4352 -4.0079 14 6 4.2733 0.0006 -0.0064 15 6 5.7803 0.0027 -0.0128 16 6 3.5843 -1.1972 -0.0010 17 6 2.1995 -1.1987 -0.0005 18 9 1.5248 -2.3692 -0.0003 19 1 -0.3634 -0.0001 -1.0276 20 1 -0.3632 -0.8900 0.5139 21 1 -0.3634 0.8899 0.5138 22 1 1.6583 2.1322 0.0007 23 1 5.2442 2.3974 0.5880 24 1 3.7079 3.2829 0.4333 25 1 6.2217 5.6456 -0.8503 26 1 6.1480 0.0007 1.0133 27 1 6.1426 -0.8855 -0.5303 28 1 6.1402 0.8944 -0.5260 29 1 4.1256 -2.1317 -0.0011 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214155272.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:24 Heat of formation + Delta-G solvation = -49.415368 kcal Electronic energy + Delta-G solvation = -13156.117452 eV Core-core repulsion = 10764.531616 eV Total energy + Delta-G solvation = -2391.585836 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.41845 -38.86814 -33.93662 -32.85212 -30.95970 -28.84742 -27.03607 -24.44757 -23.24530 -21.57353 -19.49509 -16.46452 -16.37354 -16.10375 -15.22073 -14.84021 -14.11873 -13.28285 -13.18864 -13.11923 -12.84562 -12.42164 -12.32741 -12.15690 -11.43374 -11.33239 -11.13682 -10.78180 -10.65758 -10.58394 -10.21170 -9.59457 -9.46128 -8.46296 -8.19466 -7.61193 -6.08705 -4.13038 1.78461 1.86241 3.29222 3.33803 3.36916 4.17588 4.43271 4.78461 5.18093 5.20215 5.26947 5.55298 5.71455 5.82741 5.88114 6.05040 6.10382 6.17251 6.28039 6.45755 6.69212 6.79693 6.85577 7.00601 7.17243 7.45116 7.63076 7.75954 7.87104 8.26340 8.92170 9.51071 11.00730 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.041347 B = 0.008499 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.033555 B = 3293.568752 C = 3524.073200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.129 4.129 3 C -0.097 4.097 4 C -0.041 4.041 5 C 0.049 3.951 6 C -0.512 4.512 7 H 0.057 0.943 8 C 0.060 3.940 9 N -0.893 5.893 10 Si 0.894 3.106 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.276 1.276 14 C -0.065 4.065 15 C -0.116 4.116 16 C -0.154 4.154 17 C 0.063 3.937 18 F -0.152 7.152 19 H 0.067 0.933 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.127 0.873 23 H 0.034 0.966 24 H 0.028 0.972 25 H 0.263 0.737 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.096 0.904 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 -8.399 1.612 9.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.130 4.130 3 C -0.115 4.115 4 C -0.042 4.042 5 C 0.012 3.988 6 C -0.550 4.550 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.531 5.531 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 C -0.065 4.065 15 C -0.173 4.173 16 C -0.173 4.173 17 C 0.044 3.956 18 F -0.131 7.131 19 H 0.085 0.915 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.145 0.855 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.888 -8.273 1.655 9.750 hybrid contribution 0.126 0.062 -0.991 1.001 sum -4.762 -8.210 0.664 9.514 Atomic orbital electron populations 1.20635 0.91122 1.02463 1.02151 1.19813 0.96267 0.92184 1.04750 1.20864 0.94049 0.96373 1.00224 1.20660 0.93368 0.97144 0.92987 1.18363 0.95061 0.87483 0.97849 1.20978 1.35998 1.06260 0.91814 0.92515 1.24995 0.95742 0.96242 0.97152 1.69944 1.39193 1.13064 1.30933 0.86617 0.78690 0.77732 0.84788 1.20168 1.21228 1.20120 1.19652 0.96529 0.91500 0.98857 1.20854 0.90823 1.03738 1.01856 1.20881 0.91935 0.98905 1.05581 1.17358 0.89945 0.80457 1.07805 1.91393 1.80616 1.46527 1.94590 0.91460 0.91952 0.91366 0.85515 0.94753 0.95354 0.92725 0.91886 0.92753 0.88569 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.84 36.00 0.35 -1.14 15 2 C -0.13 -2.27 5.89 -104.56 -0.62 -2.89 15 3 C -0.10 -1.88 9.33 -39.59 -0.37 -2.25 15 4 C -0.04 -0.89 5.07 -104.62 -0.53 -1.42 15 5 C 0.05 1.22 4.42 -29.04 -0.13 1.09 15 6 C -0.51 -13.79 8.30 -34.44 -0.29 -14.08 15 7 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 9 N -0.89 -25.56 13.29 55.43 0.74 -24.83 15 10 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 15 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 12 H -0.29 -6.68 7.11 56.52 0.40 -6.27 15 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 14 C -0.07 -1.27 5.88 -104.63 -0.62 -1.89 15 15 C -0.12 -2.07 9.22 36.01 0.33 -1.74 15 16 C -0.15 -2.74 9.68 -39.51 -0.38 -3.12 15 17 C 0.06 1.13 7.24 -39.42 -0.29 0.85 15 18 F -0.15 -2.60 16.48 2.25 0.04 -2.56 15 19 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 20 H 0.06 0.81 7.64 -51.93 -0.40 0.42 15 21 H 0.07 0.85 8.09 -51.93 -0.42 0.43 15 22 H 0.13 2.33 8.06 -52.49 -0.42 1.91 15 23 H 0.03 0.88 7.00 -51.93 -0.36 0.52 15 24 H 0.03 0.74 8.05 -51.93 -0.42 0.32 15 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 27 H 0.05 0.83 8.09 -51.93 -0.42 0.41 15 28 H 0.10 1.98 6.14 -51.93 -0.32 1.66 15 29 H 0.12 1.88 8.06 -52.49 -0.42 1.46 15 LS Contribution 254.40 15.07 3.83 3.83 Total: -1.00 -28.15 254.40 -6.61 -34.76 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -3.57 Total: -2.17 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: -2.62 Total: -25.03 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.74 Total: -24.83 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.15 -6.61 -34.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214155272.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.655 kcal (2) G-P(sol) polarization free energy of solvation -28.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds