Wall clock time and date at job start Mon Mar 30 2020 02:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38226 * 120.01253 * 2 1 4 4 C 1.38224 * 120.02768 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.97662 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46993 * 265.00388 * 5 4 3 7 7 H 1.07991 * 120.00449 * 359.72131 * 6 5 4 8 8 C 1.37885 * 119.99686 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.72095 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.72528 * 8 6 5 11 11 H 1.48498 * 109.47416 * 59.99812 * 10 8 6 12 12 H 1.48508 * 109.46609 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46903 * 299.99397 * 10 8 6 14 14 C 1.38270 * 120.04788 * 0.25358 * 4 3 2 15 15 C 1.50705 * 119.98336 * 179.74449 * 14 4 3 16 16 C 1.38178 * 120.02933 * 359.49125 * 14 4 3 17 17 C 1.38435 * 120.01593 * 180.02562 * 2 1 3 18 18 F 1.35105 * 120.02660 * 359.96149 * 17 2 1 19 19 H 1.08997 * 109.47368 * 90.00344 * 1 2 3 20 20 H 1.09007 * 109.46521 * 210.00386 * 1 2 3 21 21 H 1.08997 * 109.47448 * 329.99880 * 1 2 3 22 22 H 1.07998 * 119.98360 * 0.04591 * 3 2 1 23 23 H 1.08998 * 109.47083 * 144.99803 * 5 4 3 24 24 H 1.09001 * 109.46875 * 25.00066 * 5 4 3 25 25 H 0.97000 * 119.99651 * 180.02562 * 9 8 6 26 26 H 1.08999 * 109.47071 * 90.00554 * 15 14 4 27 27 H 1.09001 * 109.46727 * 209.99940 * 15 14 4 28 28 H 1.08998 * 109.47217 * 329.99503 * 15 14 4 29 29 H 1.07991 * 120.01623 * 180.27575 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1973 -0.0005 5 6 4.3332 2.5029 -0.0011 6 6 4.6907 2.8759 -1.4167 7 1 4.4058 2.2299 -2.2338 8 6 5.3862 4.0397 -1.6683 9 7 5.7327 4.8267 -0.6733 10 14 5.8360 4.4983 -3.4223 11 1 4.5981 4.6383 -4.2304 12 1 6.5766 5.7855 -3.4229 13 1 6.6918 3.4352 -4.0079 14 6 4.2733 0.0006 -0.0064 15 6 5.7803 0.0027 -0.0128 16 6 3.5843 -1.1972 -0.0010 17 6 2.1995 -1.1987 -0.0005 18 9 1.5248 -2.3692 -0.0003 19 1 -0.3634 -0.0001 -1.0276 20 1 -0.3632 -0.8900 0.5139 21 1 -0.3634 0.8899 0.5138 22 1 1.6583 2.1322 0.0007 23 1 5.2442 2.3974 0.5880 24 1 3.7079 3.2829 0.4333 25 1 6.2217 5.6456 -0.8503 26 1 6.1480 0.0007 1.0133 27 1 6.1426 -0.8855 -0.5303 28 1 6.1402 0.8944 -0.5260 29 1 4.1256 -2.1317 -0.0011 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214155272.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:24 Heat of formation + Delta-G solvation = -63.333065 kcal Electronic energy + Delta-G solvation = -13156.720969 eV Core-core repulsion = 10764.531616 eV Total energy + Delta-G solvation = -2392.189353 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.80020 -40.36204 -35.66651 -34.52125 -32.69821 -30.16274 -28.87138 -25.86933 -25.07437 -23.10786 -21.02323 -18.48179 -17.87433 -17.55638 -16.69380 -16.60004 -15.68766 -14.77085 -14.70900 -14.66155 -14.14131 -13.99091 -13.75868 -13.63358 -13.22683 -12.96834 -12.64030 -12.54315 -12.36063 -12.21380 -11.74272 -11.46044 -11.39863 -10.57047 -9.64479 -9.15240 -8.17561 -6.29906 0.32950 0.37240 1.42186 1.43396 1.51703 2.40319 2.73283 3.13497 3.35969 3.83886 3.90697 4.15961 4.29853 4.43437 4.73351 4.75973 4.76795 4.84893 4.90964 5.13166 5.18132 5.23440 5.29649 5.44562 5.47185 5.57988 5.77153 6.01048 6.08611 6.23089 6.81734 7.38148 8.91101 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.041347 B = 0.008499 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.033555 B = 3293.568752 C = 3524.073200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.126 4.126 3 C -0.106 4.106 4 C -0.071 4.071 5 C 0.061 3.939 6 C -0.522 4.522 7 H 0.052 0.948 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.959 3.041 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.268 1.268 14 C -0.076 4.076 15 C -0.112 4.112 16 C -0.148 4.148 17 C 0.063 3.937 18 F -0.144 7.144 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.128 0.872 23 H 0.015 0.985 24 H 0.002 0.998 25 H 0.265 0.735 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.639 -9.923 0.806 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.127 4.127 3 C -0.124 4.124 4 C -0.071 4.071 5 C 0.024 3.976 6 C -0.560 4.560 7 H 0.070 0.930 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.783 3.217 11 H -0.196 1.196 12 H -0.207 1.207 13 H -0.192 1.192 14 C -0.076 4.076 15 C -0.168 4.168 16 C -0.167 4.167 17 C 0.044 3.956 18 F -0.123 7.123 19 H 0.098 0.902 20 H 0.093 0.907 21 H 0.100 0.900 22 H 0.146 0.854 23 H 0.034 0.966 24 H 0.021 0.979 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.579 -9.809 0.849 11.317 hybrid contribution 0.286 0.468 -0.693 0.884 sum -5.293 -9.341 0.156 10.737 Atomic orbital electron populations 1.20726 0.88425 1.03821 1.03322 1.20109 0.98237 0.91262 1.03116 1.20912 0.93413 0.97459 1.00664 1.20467 0.94283 0.96273 0.96061 1.18080 0.94172 0.88903 0.96460 1.21239 1.35772 1.06269 0.92707 0.92982 1.25816 0.95646 0.96193 1.01193 1.70060 1.40059 1.13556 1.33065 0.85596 0.78579 0.77613 0.79873 1.19577 1.20747 1.19248 1.19791 0.97288 0.91458 0.99067 1.20802 0.90055 1.03366 1.02596 1.21099 0.92117 0.99243 1.04205 1.17494 0.90207 0.80815 1.07133 1.91418 1.80434 1.45982 1.94446 0.90238 0.90695 0.89993 0.85395 0.96639 0.97929 0.92609 0.90652 0.89934 0.91941 0.83005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.68 9.84 71.23 0.70 -1.98 15 2 C -0.13 -4.20 5.89 -19.82 -0.12 -4.31 15 3 C -0.11 -4.10 9.33 22.26 0.21 -3.89 15 4 C -0.07 -3.06 5.07 -19.86 -0.10 -3.16 15 5 C 0.06 3.13 4.42 29.10 0.13 3.26 15 6 C -0.52 -28.75 8.30 25.60 0.21 -28.54 15 7 H 0.05 2.85 7.74 -2.92 -0.02 2.83 15 8 C 0.01 0.56 5.46 84.66 0.46 1.02 15 9 N -0.93 -54.36 13.29 21.45 0.28 -54.08 15 10 Si 0.96 43.27 29.54 68.60 2.03 45.30 15 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 13 H -0.27 -11.64 7.11 99.48 0.71 -10.94 15 14 C -0.08 -2.89 5.88 -19.87 -0.12 -3.01 15 15 C -0.11 -3.91 9.22 71.24 0.66 -3.26 15 16 C -0.15 -4.89 9.68 22.31 0.22 -4.68 15 17 C 0.06 2.07 7.24 22.38 0.16 2.24 15 18 F -0.14 -4.44 16.48 44.97 0.74 -3.70 15 19 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 20 H 0.07 1.71 7.64 -2.38 -0.02 1.69 15 21 H 0.08 1.84 8.09 -2.39 -0.02 1.82 15 22 H 0.13 4.76 8.06 -2.91 -0.02 4.73 15 23 H 0.02 0.83 7.00 -2.39 -0.02 0.82 15 24 H 0.00 0.13 8.05 -2.39 -0.02 0.11 15 25 H 0.27 14.67 8.31 -92.71 -0.77 13.90 15 26 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 27 H 0.08 2.36 8.09 -2.39 -0.02 2.34 15 28 H 0.06 2.61 6.14 -2.39 -0.01 2.60 15 29 H 0.15 4.08 8.06 -2.92 -0.02 4.06 15 Total: -1.00 -60.16 254.40 6.60 -53.56 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.13 Total: 5.23 kcal Atomic # 6 Polarization: -48.72 SS G_CDS: 2.41 Total: -46.31 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.28 Total: -54.08 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.74 Total: -3.70 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -60.16 6.60 -53.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214155272.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.775 kcal (2) G-P(sol) polarization free energy of solvation -60.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds